Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2439_RS01830 Genome accession   NZ_CP065191
Coordinates   358239..358727 (+) Length   162 a.a.
NCBI ID   WP_012514998.1    Uniprot ID   A0AAW3GP39
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 356312..357709 358239..358727 flank 530


Gene organization within MGE regions


Location: 356312..358727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS01820 (HIEAAJJG_00358) - 356312..357709 (-) 1398 WP_196819855.1 ISNCY-like element ISSeq2 family transposase -
  I2439_RS01825 (HIEAAJJG_00359) rpsF 357930..358220 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  I2439_RS01830 (HIEAAJJG_00360) ssbA 358239..358727 (+) 489 WP_012514998.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17765.60 Da        Isoelectric Point: 4.9008

>NTDB_id=507811 I2439_RS01830 WP_012514998.1 358239..358727(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPAANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=507811 I2439_RS01830 WP_012514998.1 358239..358727(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGGCAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377
  ssb Glaesserella parasuis strain SC1401

32.065

100

0.364