Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2438_RS02125 Genome accession   NZ_CP065190
Coordinates   392591..393079 (+) Length   162 a.a.
NCBI ID   WP_012514998.1    Uniprot ID   A0AAW3GP39
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 387591..398079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2438_RS02100 (HCFMJIKG_00409) - 388020..388964 (-) 945 WP_337972317.1 LPXTG cell wall anchor domain-containing protein -
  I2438_RS02105 (HCFMJIKG_00410) - 389182..389466 (-) 285 WP_021320372.1 hypothetical protein -
  I2438_RS02110 (HCFMJIKG_00411) mutY 389755..390903 (-) 1149 WP_021320373.1 A/G-specific adenine glycosylase -
  I2438_RS02115 - 390992..391187 (+) 196 Protein_385 HicB family protein -
  I2438_RS02120 (HCFMJIKG_00412) rpsF 392282..392572 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  I2438_RS02125 (HCFMJIKG_00413) ssbA 392591..393079 (+) 489 WP_012514998.1 single-stranded DNA-binding protein Machinery gene
  I2438_RS02130 (HCFMJIKG_00414) rpsR 393238..393477 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  I2438_RS02135 (HCFMJIKG_00415) - 393737..394387 (-) 651 WP_043025209.1 DUF1129 domain-containing protein -
  I2438_RS02140 - 394442..394612 (+) 171 WP_154231255.1 hypothetical protein -
  I2438_RS02145 (HCFMJIKG_00416) - 394637..395581 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17765.60 Da        Isoelectric Point: 4.9008

>NTDB_id=507751 I2438_RS02125 WP_012514998.1 392591..393079(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPAANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=507751 I2438_RS02125 WP_012514998.1 392591..393079(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGGCAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377
  ssb Glaesserella parasuis strain SC1401

32.065

100

0.364