Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   I3J23_RS16870 Genome accession   NZ_CP065159
Coordinates   3265242..3265838 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3260242..3270838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS16840 (I3J23_16840) - 3260457..3260912 (+) 456 WP_003154599.1 flavodoxin -
  I3J23_RS16845 (I3J23_16845) dapD 3260994..3261704 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  I3J23_RS16850 (I3J23_16850) - 3261774..3262898 (+) 1125 WP_046559551.1 N-acetyldiaminopimelate deacetylase -
  I3J23_RS16855 (I3J23_16855) - 3262959..3263204 (+) 246 WP_003154596.1 YkuS family protein -
  I3J23_RS16860 (I3J23_16860) - 3263238..3264044 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  I3J23_RS16865 (I3J23_16865) - 3264332..3264790 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  I3J23_RS16870 (I3J23_16870) rok 3265242..3265838 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  I3J23_RS16875 (I3J23_16875) - 3265859..3266851 (-) 993 WP_046559552.1 hypothetical protein -
  I3J23_RS16880 (I3J23_16880) - 3266997..3267599 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  I3J23_RS16885 (I3J23_16885) - 3267651..3268670 (+) 1020 WP_069013468.1 molybdopterin-synthase adenylyltransferase MoeB -
  I3J23_RS16890 (I3J23_16890) glp 3268688..3269980 (+) 1293 WP_088005373.1 gephyrin-like molybdotransferase Glp -
  I3J23_RS16895 (I3J23_16895) mobB 3269941..3270462 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=507574 I3J23_RS16870 WP_003154591.1 3265242..3265838(+) (rok) [Bacillus amyloliquefaciens strain GXU-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=507574 I3J23_RS16870 WP_003154591.1 3265242..3265838(+) (rok) [Bacillus amyloliquefaciens strain GXU-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843