Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I3J23_RS17860 Genome accession   NZ_CP065159
Coordinates   3507140..3507919 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3502140..3512919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS17840 (I3J23_17840) trmFO 3502827..3504134 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I3J23_RS17845 (I3J23_17845) xerC 3504204..3505121 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  I3J23_RS17850 (I3J23_17850) hslV 3505137..3505682 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  I3J23_RS17855 (I3J23_17855) hslU 3505699..3507102 (+) 1404 WP_207579514.1 HslU--HslV peptidase ATPase subunit -
  I3J23_RS17860 (I3J23_17860) codY 3507140..3507919 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I3J23_RS17865 (I3J23_17865) flgB 3508273..3508662 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  I3J23_RS17870 (I3J23_17870) flgC 3508662..3509114 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  I3J23_RS17875 (I3J23_17875) fliE 3509125..3509445 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  I3J23_RS17880 (I3J23_17880) fliF 3509488..3511098 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  I3J23_RS17885 (I3J23_17885) fliG 3511111..3512127 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  I3J23_RS17890 (I3J23_17890) fliH 3512120..3512875 (+) 756 WP_014305003.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=507577 I3J23_RS17860 WP_003154263.1 3507140..3507919(+) (codY) [Bacillus amyloliquefaciens strain GXU-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=507577 I3J23_RS17860 WP_003154263.1 3507140..3507919(+) (codY) [Bacillus amyloliquefaciens strain GXU-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471