Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I3J23_RS16980 Genome accession   NZ_CP065159
Coordinates   3285737..3286021 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3280737..3291021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS16960 (I3J23_16960) - 3281984..3282892 (+) 909 WP_046559556.1 ketopantoate reductase family protein -
  I3J23_RS16965 (I3J23_16965) - 3282922..3284154 (-) 1233 WP_025851469.1 aminopeptidase -
  I3J23_RS16970 (I3J23_16970) - 3284255..3284389 (-) 135 WP_003154559.1 protein YkpC -
  I3J23_RS16975 (I3J23_16975) mreBH 3284461..3285468 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  I3J23_RS16980 (I3J23_16980) abrB 3285737..3286021 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I3J23_RS16985 (I3J23_16985) - 3286194..3287498 (+) 1305 WP_003154556.1 ATP-binding protein -
  I3J23_RS16990 (I3J23_16990) - 3287500..3288327 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  I3J23_RS16995 (I3J23_16995) ktrC 3288368..3289033 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  I3J23_RS17000 (I3J23_17000) ade 3289182..3290915 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=507575 I3J23_RS16980 WP_003154557.1 3285737..3286021(+) (abrB) [Bacillus amyloliquefaciens strain GXU-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=507575 I3J23_RS16980 WP_003154557.1 3285737..3286021(+) (abrB) [Bacillus amyloliquefaciens strain GXU-1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543