Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I3J23_RS07180 Genome accession   NZ_CP065159
Coordinates   1380929..1381618 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375929..1386618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS07145 (I3J23_07145) - 1376127..1376609 (-) 483 WP_003151394.1 flagellar protein FlgN -
  I3J23_RS07150 (I3J23_07150) flgM 1376624..1376890 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  I3J23_RS07155 (I3J23_07155) - 1376960..1377379 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  I3J23_RS07160 (I3J23_07160) comFC 1377453..1378142 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  I3J23_RS07165 (I3J23_07165) - 1378148..1378432 (-) 285 WP_003151389.1 competence protein ComFB -
  I3J23_RS07170 (I3J23_07170) comFA 1378490..1379875 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  I3J23_RS07175 (I3J23_07175) - 1379983..1380831 (-) 849 WP_044052857.1 DegV family protein -
  I3J23_RS07180 (I3J23_07180) degU 1380929..1381618 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I3J23_RS07185 (I3J23_07185) degS 1381695..1382858 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  I3J23_RS07190 (I3J23_07190) - 1383080..1383727 (+) 648 WP_003151384.1 YigZ family protein -
  I3J23_RS07195 (I3J23_07195) - 1383732..1384946 (+) 1215 WP_003151383.1 LCP family protein -
  I3J23_RS07200 (I3J23_07200) - 1385036..1386112 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=507536 I3J23_RS07180 WP_003219701.1 1380929..1381618(-) (degU) [Bacillus amyloliquefaciens strain GXU-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=507536 I3J23_RS07180 WP_003219701.1 1380929..1381618(-) (degU) [Bacillus amyloliquefaciens strain GXU-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1