Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I3J23_RS07160 Genome accession   NZ_CP065159
Coordinates   1377453..1378142 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372453..1383142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS07125 (I3J23_07125) fliW 1372544..1372975 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  I3J23_RS07130 (I3J23_07130) - 1373005..1373574 (-) 570 WP_024085861.1 DUF6470 family protein -
  I3J23_RS07135 (I3J23_07135) flgL 1373665..1374582 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  I3J23_RS07140 (I3J23_07140) flgK 1374594..1376111 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  I3J23_RS07145 (I3J23_07145) - 1376127..1376609 (-) 483 WP_003151394.1 flagellar protein FlgN -
  I3J23_RS07150 (I3J23_07150) flgM 1376624..1376890 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  I3J23_RS07155 (I3J23_07155) - 1376960..1377379 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  I3J23_RS07160 (I3J23_07160) comFC 1377453..1378142 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  I3J23_RS07165 (I3J23_07165) - 1378148..1378432 (-) 285 WP_003151389.1 competence protein ComFB -
  I3J23_RS07170 (I3J23_07170) comFA 1378490..1379875 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  I3J23_RS07175 (I3J23_07175) - 1379983..1380831 (-) 849 WP_044052857.1 DegV family protein -
  I3J23_RS07180 (I3J23_07180) degU 1380929..1381618 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I3J23_RS07185 (I3J23_07185) degS 1381695..1382858 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=507534 I3J23_RS07160 WP_197080391.1 1377453..1378142(-) (comFC) [Bacillus amyloliquefaciens strain GXU-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=507534 I3J23_RS07160 WP_197080391.1 1377453..1378142(-) (comFC) [Bacillus amyloliquefaciens strain GXU-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598