Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I3J23_RS07170 Genome accession   NZ_CP065159
Coordinates   1378490..1379875 (-) Length   461 a.a.
NCBI ID   WP_046560106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373490..1384875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS07135 (I3J23_07135) flgL 1373665..1374582 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  I3J23_RS07140 (I3J23_07140) flgK 1374594..1376111 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  I3J23_RS07145 (I3J23_07145) - 1376127..1376609 (-) 483 WP_003151394.1 flagellar protein FlgN -
  I3J23_RS07150 (I3J23_07150) flgM 1376624..1376890 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  I3J23_RS07155 (I3J23_07155) - 1376960..1377379 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  I3J23_RS07160 (I3J23_07160) comFC 1377453..1378142 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  I3J23_RS07165 (I3J23_07165) - 1378148..1378432 (-) 285 WP_003151389.1 competence protein ComFB -
  I3J23_RS07170 (I3J23_07170) comFA 1378490..1379875 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  I3J23_RS07175 (I3J23_07175) - 1379983..1380831 (-) 849 WP_044052857.1 DegV family protein -
  I3J23_RS07180 (I3J23_07180) degU 1380929..1381618 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I3J23_RS07185 (I3J23_07185) degS 1381695..1382858 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  I3J23_RS07190 (I3J23_07190) - 1383080..1383727 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.10 Da        Isoelectric Point: 10.1601

>NTDB_id=507535 I3J23_RS07170 WP_046560106.1 1378490..1379875(-) (comFA) [Bacillus amyloliquefaciens strain GXU-1]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNCYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=507535 I3J23_RS07170 WP_046560106.1 1378490..1379875(-) (comFA) [Bacillus amyloliquefaciens strain GXU-1]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACTGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631