Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   I3J23_RS05205 Genome accession   NZ_CP065159
Coordinates   997550..998194 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 992550..1003194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS05170 (I3J23_05170) - 993735..994166 (+) 432 WP_046560011.1 Na(+)/H(+) antiporter subunit B -
  I3J23_RS05175 (I3J23_05175) - 994166..994507 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  I3J23_RS05180 (I3J23_05180) - 994500..995981 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  I3J23_RS05185 (I3J23_05185) - 995987..996463 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  I3J23_RS05190 (I3J23_05190) - 996463..996747 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  I3J23_RS05195 (I3J23_05195) mnhG 996731..997105 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  I3J23_RS05200 (I3J23_05200) - 997145..997528 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  I3J23_RS05205 (I3J23_05205) comA 997550..998194 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  I3J23_RS05210 (I3J23_05210) comP 998275..1000578 (-) 2304 WP_207579565.1 histidine kinase Regulator
  I3J23_RS05215 (I3J23_05215) comX 1000598..1000777 (-) 180 WP_306383677.1 competence pheromone ComX -
  I3J23_RS05220 (I3J23_05220) comQ 1000731..1001717 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  I3J23_RS05225 (I3J23_05225) degQ 1001848..1001988 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  I3J23_RS05235 (I3J23_05235) - 1002454..1002795 (+) 342 WP_046560014.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=507528 I3J23_RS05205 WP_003152052.1 997550..998194(-) (comA) [Bacillus amyloliquefaciens strain GXU-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=507528 I3J23_RS05205 WP_003152052.1 997550..998194(-) (comA) [Bacillus amyloliquefaciens strain GXU-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864