Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   I3J23_RS05210 Genome accession   NZ_CP065159
Coordinates   998275..1000578 (-) Length   767 a.a.
NCBI ID   WP_207579565.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 993275..1005578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS05170 (I3J23_05170) - 993735..994166 (+) 432 WP_046560011.1 Na(+)/H(+) antiporter subunit B -
  I3J23_RS05175 (I3J23_05175) - 994166..994507 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  I3J23_RS05180 (I3J23_05180) - 994500..995981 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  I3J23_RS05185 (I3J23_05185) - 995987..996463 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  I3J23_RS05190 (I3J23_05190) - 996463..996747 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  I3J23_RS05195 (I3J23_05195) mnhG 996731..997105 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  I3J23_RS05200 (I3J23_05200) - 997145..997528 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  I3J23_RS05205 (I3J23_05205) comA 997550..998194 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  I3J23_RS05210 (I3J23_05210) comP 998275..1000578 (-) 2304 WP_207579565.1 histidine kinase Regulator
  I3J23_RS05215 (I3J23_05215) comX 1000598..1000777 (-) 180 WP_306383677.1 competence pheromone ComX -
  I3J23_RS05220 (I3J23_05220) comQ 1000731..1001717 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  I3J23_RS05225 (I3J23_05225) degQ 1001848..1001988 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  I3J23_RS05235 (I3J23_05235) - 1002454..1002795 (+) 342 WP_046560014.1 hypothetical protein -
  I3J23_RS05240 (I3J23_05240) - 1002802..1004022 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 88990.42 Da        Isoelectric Point: 8.5618

>NTDB_id=507529 I3J23_RS05210 WP_207579565.1 998275..1000578(-) (comP) [Bacillus amyloliquefaciens strain GXU-1]
MKKLIKPFTISIIILSVIYVCYVAFININGLIVGTKIVENKHKVLEVAEMSKTSYGKFVGLKQGDMIVKINNKKPSLKYL
KGDTLYHVKSLDIKRNGQQIHLDDFDIVNLNGYYSYFLFVLPLVFYFLSLICIFYIVKVSQTRKSIAGYVLILFLLDISI
AYMSAGGPSRGHEFNRYINLFTFIASPIFYLQFIQEYFKELGKKFANRLISFLYIIPIINLLNEPFRHIYSYDFTTNLNL
VSFFFVTIYAFISVFYHLYKFKYSEHAYILKVLILTNTLSFLPFLLFYVIQIILTGSYILDALAAASLLVLIPLGLVYQF
VANKIFDIEFILGRMRYYGLLALVPALFIVGISAWFESIDIQMNPAQQTVFFFIVIFVIFYFKEVMDYKFRLKRFSEKFN
YQDSIFKYTQLIRSITSLKQMFKELKKTILDVLLVSKAYVFEVTSEGDILYHDKKDNEPDWEMYSKEFKKVTSEIGKIIE
LNRGFLIKIGERGGSSYVLLCLSTINTPRLTRDEISWLKTLSFYTSVSMENVIQIEELMNHLQDLKQQGSNPVWLKKLMF
TIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLG
LVKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVG
CNQEEGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=507529 I3J23_RS05210 WP_207579565.1 998275..1000578(-) (comP) [Bacillus amyloliquefaciens strain GXU-1]
TTGAAGAAGCTTATAAAGCCATTTACAATATCCATTATTATTTTAAGTGTTATCTATGTTTGTTATGTCGCTTTTATTAA
CATAAATGGACTTATTGTAGGCACGAAAATTGTAGAAAATAAGCATAAAGTACTCGAAGTTGCTGAAATGTCAAAAACCT
CGTATGGAAAATTTGTAGGTTTAAAACAAGGTGATATGATTGTCAAAATTAATAATAAAAAACCATCTTTAAAATATCTA
AAAGGGGATACTCTCTATCACGTTAAGAGCTTAGATATAAAAAGAAATGGACAGCAAATTCATTTAGATGATTTTGATAT
TGTTAATTTAAATGGATACTACAGTTACTTTTTATTTGTCCTTCCCCTTGTATTTTATTTTTTGAGTTTAATATGTATAT
TTTATATTGTAAAGGTGAGTCAAACCAGAAAATCGATAGCTGGGTATGTCCTAATTCTCTTCCTGTTAGATATCTCAATA
GCTTATATGAGTGCTGGTGGTCCCTCAAGAGGTCATGAATTTAACAGATATATAAATTTGTTTACCTTCATTGCCTCACC
TATATTTTATCTCCAGTTTATTCAAGAGTATTTCAAGGAATTAGGTAAAAAATTTGCCAATCGCTTGATTTCTTTTCTAT
ATATCATACCGATAATTAATCTCTTAAACGAACCGTTTCGACATATTTATTCATATGACTTCACAACAAATTTAAATTTA
GTATCGTTTTTCTTCGTGACTATCTATGCATTTATATCTGTTTTCTATCATCTGTATAAATTCAAGTATTCAGAACATGC
TTATATTCTTAAGGTTTTAATTTTAACAAACACGCTCTCTTTTTTGCCTTTTTTGCTTTTTTATGTAATCCAAATTATTT
TGACAGGAAGTTATATATTAGATGCGTTGGCAGCGGCCTCCCTGCTCGTACTTATCCCATTGGGATTGGTATACCAGTTC
GTAGCTAACAAAATTTTTGATATTGAATTCATTTTAGGCAGGATGAGGTACTATGGCTTGCTTGCCTTAGTTCCAGCCCT
TTTTATTGTTGGGATTTCAGCTTGGTTCGAGTCAATAGATATACAAATGAATCCTGCTCAGCAAACTGTATTTTTCTTTA
TTGTGATATTTGTTATTTTTTATTTTAAAGAAGTAATGGATTATAAATTTCGGTTAAAACGTTTTTCTGAAAAATTTAAT
TATCAAGATAGTATATTCAAATATACTCAGCTTATCAGAAGCATAACATCTTTAAAACAAATGTTTAAAGAACTAAAAAA
GACGATTCTGGATGTTCTACTTGTCAGTAAAGCTTATGTCTTTGAAGTTACCTCTGAGGGTGACATTTTATATCATGATA
AAAAGGATAATGAGCCTGACTGGGAAATGTATTCAAAAGAATTTAAGAAAGTTACTTCAGAGATTGGAAAAATCATTGAG
CTAAACCGCGGTTTTTTAATCAAGATAGGAGAACGCGGGGGAAGTTCTTATGTTTTGCTTTGTTTGTCCACTATTAATAC
ACCGAGACTGACACGAGATGAGATTTCATGGTTGAAGACATTGTCTTTCTATACGAGTGTCTCTATGGAAAATGTGATAC
AGATCGAAGAACTCATGAACCATTTACAAGACCTGAAACAACAAGGCTCAAACCCGGTCTGGCTCAAAAAGCTGATGTTT
ACGATCGAGGAAAAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGATTTGATTTCTTTGAAGCG
CCAGTGTGAGCTGTTTCTGGCCGATTTTAAGAAAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGA
ATGAGCAGATGTCGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGGCCTCAGCTGCTGTATGATTTGGGT
CTGGTCAAGGCGGTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTT
TACGGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGGAATTTCTTTCGAACGCCATGAAGCATT
CACAGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGC
TGCAATCAGGAAGAAGGCGGCGGACAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGG
ACGGATGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(567-636)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

72.857

100

0.731