Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   BTD91_RS12380 Genome accession   NZ_CP065150
Coordinates   2746511..2747092 (+) Length   193 a.a.
NCBI ID   WP_017057552.1    Uniprot ID   A0A2N7JGJ3
Organism   Vibrio kanaloae strain R17     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741511..2752092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS12360 (BTD91_12360) panP 2741811..2743454 (-) 1644 WP_017057556.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  BTD91_RS12365 (BTD91_12365) - 2743573..2744100 (-) 528 WP_017057555.1 hypothetical protein -
  BTD91_RS12370 (BTD91_12370) - 2744275..2745180 (-) 906 WP_017057554.1 lysine exporter LysO family protein -
  BTD91_RS12375 (BTD91_12375) - 2745235..2746155 (-) 921 WP_029627151.1 HDOD domain-containing protein -
  BTD91_RS12380 (BTD91_12380) tfoX 2746511..2747092 (+) 582 WP_017057552.1 TfoX/Sxy family DNA transformation protein Regulator
  BTD91_RS12385 (BTD91_12385) - 2747223..2747765 (-) 543 WP_017057551.1 hypothetical protein -
  BTD91_RS12390 (BTD91_12390) - 2747995..2748492 (-) 498 WP_017057550.1 response regulator -
  BTD91_RS12395 (BTD91_12395) - 2748485..2750428 (-) 1944 WP_077680537.1 ATP-binding protein -
  BTD91_RS12400 (BTD91_12400) - 2750612..2751874 (+) 1263 WP_017057548.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22141.63 Da        Isoelectric Point: 9.7798

>NTDB_id=507445 BTD91_RS12380 WP_017057552.1 2746511..2747092(+) (tfoX) [Vibrio kanaloae strain R17]
MTETAFINYVNQFGKHQKRSMFGGLGLFQNDAMFALLTGGCLFIRGGNSLDKKLTDLDCEKYRHVKKQTIATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=507445 BTD91_RS12380 WP_017057552.1 2746511..2747092(+) (tfoX) [Vibrio kanaloae strain R17]
ATGACAGAGACAGCATTTATTAACTACGTGAATCAATTTGGCAAACATCAAAAACGTTCTATGTTTGGAGGTCTTGGCCT
TTTTCAAAACGACGCTATGTTCGCTTTATTGACAGGAGGTTGTTTATTCATTAGAGGTGGTAATTCATTAGATAAAAAAC
TGACGGACCTTGATTGTGAAAAATATCGCCATGTTAAAAAGCAGACAATAGCAACGGTAAATTATTACGATATTACTGAC
CTGTTTACATGTGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATACAGCAACGTAGTTTCAA
AAAATCTTCAGCGAGCCGCAGGTTAAGAGATCTGCCCAACATGCAACTTACACTAGAACGTATGGTGAAAAAGGCTGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGTGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAATGATGTT
GACTTAAAACTACTTTGGAAATTTGCAGGTGCAATTGATGGTATCCATTGGAAGCTGTTGCAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JGJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.021

100

0.72
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.021

100

0.72
  tfoX Vibrio cholerae strain A1552

72.021

100

0.72
  tfoX Vibrio campbellii strain DS40M4

68.912

100

0.689
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

100

0.689
  tfoX Aliivibrio fischeri ES114

58.947

98.446

0.58