Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BTD91_RS07610 Genome accession   NZ_CP065150
Coordinates   1743104..1743703 (+) Length   199 a.a.
NCBI ID   WP_017055835.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1738104..1748703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS07595 (BTD91_07595) oxyR 1738392..1739282 (+) 891 WP_017055838.1 DNA-binding transcriptional regulator OxyR -
  BTD91_RS07600 (BTD91_07600) - 1739382..1741943 (-) 2562 WP_175627321.1 penicillin-binding protein 1A -
  BTD91_RS07605 (BTD91_07605) pilM 1742095..1743120 (+) 1026 WP_077680948.1 type IV pilus assembly protein PilM Machinery gene
  BTD91_RS07610 (BTD91_07610) pilN 1743104..1743703 (+) 600 WP_017055835.1 PilN domain-containing protein Machinery gene
  BTD91_RS07615 (BTD91_07615) pilO 1743696..1744307 (+) 612 WP_060468742.1 type 4a pilus biogenesis protein PilO Machinery gene
  BTD91_RS07620 (BTD91_07620) pilP 1744294..1744812 (+) 519 WP_077680947.1 pilus assembly protein PilP Machinery gene
  BTD91_RS07625 (BTD91_07625) pilQ 1744872..1746563 (+) 1692 WP_046224652.1 type IV pilus secretin PilQ Machinery gene
  BTD91_RS07630 (BTD91_07630) aroK 1746740..1747258 (+) 519 WP_017061125.1 shikimate kinase AroK -
  BTD91_RS07635 (BTD91_07635) aroB 1747285..1748373 (+) 1089 WP_077680945.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22902.36 Da        Isoelectric Point: 9.5917

>NTDB_id=507425 BTD91_RS07610 WP_017055835.1 1743104..1743703(+) (pilN) [Vibrio kanaloae strain R17]
MLHQINLLPWRDEIRSQYKKRFIHLVILGVIIALGGQWAVGNYFHDQQAKQQARLNYLNQYIAQLDQKIQSLKVAEQEHK
AILTRLGVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMEGISDSTSRLATMLDNLERSRSLKGVEMHSII
HNRKRFNKDFQTFNVSFVFIPVSLDSPAENVKEKGANHG

Nucleotide


Download         Length: 600 bp        

>NTDB_id=507425 BTD91_RS07610 WP_017055835.1 1743104..1743703(+) (pilN) [Vibrio kanaloae strain R17]
ATGTTGCATCAAATTAACTTGCTGCCTTGGCGCGATGAAATTCGATCTCAGTATAAGAAGCGTTTTATTCATCTAGTCAT
TCTAGGCGTCATCATTGCGCTTGGTGGGCAATGGGCGGTCGGTAACTACTTTCACGACCAACAAGCCAAGCAACAAGCGC
GCCTCAACTATCTCAATCAATATATCGCTCAACTCGACCAGAAAATTCAGTCGTTAAAAGTGGCAGAACAGGAGCACAAA
GCCATTCTTACTAGACTTGGCGTGGTCGAATCCTTACAGCTCGGTCGCAATAAGACAACTGATTTTATGAACCTGATGCC
GGAGCTCATCCCTGAAGGCGTGTATGTCGATAAGATAAAAATGAATGGTCAGGAAATTGAAATGGAGGGGATCAGTGACA
GTACTTCTCGTTTGGCAACGATGTTGGATAACTTAGAACGCTCCCGTTCCCTTAAAGGGGTTGAGATGCACTCTATCATT
CATAATCGCAAACGCTTCAATAAGGACTTTCAGACCTTCAACGTCTCTTTTGTGTTTATCCCTGTGTCATTAGATAGTCC
AGCCGAGAATGTAAAAGAGAAGGGGGCGAATCATGGTTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

60.302

100

0.603
  pilN Vibrio campbellii strain DS40M4

63.043

92.462

0.583