Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I0K14_RS26295 Genome accession   NZ_CP065149
Coordinates   5135633..5136154 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus paranthracis strain Gxun-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5130633..5141154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS26275 (I0K14_26275) rplI 5131843..5132289 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  I0K14_RS26280 (I0K14_26280) - 5132286..5134259 (-) 1974 WP_001113897.1 DHH family phosphoesterase -
  I0K14_RS26285 (I0K14_26285) - 5134338..5135273 (-) 936 WP_001246427.1 YybS family protein -
  I0K14_RS26290 (I0K14_26290) rpsR 5135354..5135587 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  I0K14_RS26295 (I0K14_26295) ssbA 5135633..5136154 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  I0K14_RS26300 (I0K14_26300) rpsF 5136181..5136471 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  I0K14_RS26305 (I0K14_26305) ychF 5136663..5137763 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  I0K14_RS26310 (I0K14_26310) - 5137879..5138076 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  I0K14_RS26315 (I0K14_26315) - 5138097..5138978 (-) 882 WP_000382911.1 mechanosensitive ion channel family protein -
  I0K14_RS26320 (I0K14_26320) yyaC 5139238..5139834 (+) 597 WP_001020729.1 spore protease YyaC -
  I0K14_RS26325 (I0K14_26325) spo0J 5139855..5140706 (-) 852 WP_001051838.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=507409 I0K14_RS26295 WP_000981967.1 5135633..5136154(-) (ssbA) [Bacillus paranthracis strain Gxun-30]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=507409 I0K14_RS26295 WP_000981967.1 5135633..5136154(-) (ssbA) [Bacillus paranthracis strain Gxun-30]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382