Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I0U47_RS07690 | Genome accession | NZ_CP065146 |
| Coordinates | 1673054..1673551 (-) | Length | 165 a.a. |
| NCBI ID | WP_049212214.1 | Uniprot ID | A0AAJ4RET5 |
| Organism | Proteus mirabilis strain PmBJ020-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1669765..1712774 | 1673054..1673551 | within | 0 |
Gene organization within MGE regions
Location: 1669765..1712774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I0U47_RS07645 (I0U47_07645) | - | 1669765..1670760 (-) | 996 | WP_124740978.1 | tyrosine-type recombinase/integrase | - |
| I0U47_RS07650 (I0U47_07650) | - | 1670717..1670962 (-) | 246 | WP_049211074.1 | excisionase | - |
| I0U47_RS07655 (I0U47_07655) | - | 1670959..1671297 (-) | 339 | WP_004247455.1 | phage protein NinX family protein | - |
| I0U47_RS07660 (I0U47_07660) | - | 1671290..1671466 (-) | 177 | WP_012367596.1 | hypothetical protein | - |
| I0U47_RS07665 (I0U47_07665) | - | 1671624..1671869 (-) | 246 | WP_049211072.1 | hypothetical protein | - |
| I0U47_RS07670 (I0U47_07670) | - | 1671862..1672131 (-) | 270 | WP_049211071.1 | hypothetical protein | - |
| I0U47_RS07675 (I0U47_07675) | - | 1672131..1672304 (-) | 174 | WP_232467315.1 | hypothetical protein | - |
| I0U47_RS07680 (I0U47_07680) | - | 1672340..1672666 (-) | 327 | WP_036932464.1 | hypothetical protein | - |
| I0U47_RS07685 (I0U47_07685) | - | 1672700..1673038 (-) | 339 | WP_049212213.1 | hypothetical protein | - |
| I0U47_RS07690 (I0U47_07690) | ssb | 1673054..1673551 (-) | 498 | WP_049212214.1 | single-stranded DNA-binding protein | Machinery gene |
| I0U47_RS07695 (I0U47_07695) | - | 1673544..1674077 (-) | 534 | WP_109829194.1 | hypothetical protein | - |
| I0U47_RS07700 (I0U47_07700) | - | 1674134..1674961 (-) | 828 | WP_004247125.1 | DUF2303 family protein | - |
| I0U47_RS07705 (I0U47_07705) | - | 1675027..1675401 (-) | 375 | WP_004247126.1 | hypothetical protein | - |
| I0U47_RS07710 (I0U47_07710) | - | 1675609..1675812 (-) | 204 | WP_049255036.1 | hypothetical protein | - |
| I0U47_RS07715 (I0U47_07715) | - | 1676065..1676802 (-) | 738 | WP_223852282.1 | HIRAN domain-containing protein | - |
| I0U47_RS07720 (I0U47_07720) | - | 1676795..1677730 (-) | 936 | WP_036900929.1 | hypothetical protein | - |
| I0U47_RS07725 (I0U47_07725) | - | 1677812..1678486 (-) | 675 | WP_049213205.1 | S24 family peptidase | - |
| I0U47_RS07730 (I0U47_07730) | - | 1678582..1678809 (+) | 228 | WP_036900931.1 | helix-turn-helix transcriptional regulator | - |
| I0U47_RS07735 (I0U47_07735) | - | 1678848..1679306 (+) | 459 | WP_124740977.1 | YmfL family putative regulatory protein | - |
| I0U47_RS07740 (I0U47_07740) | - | 1679564..1679743 (+) | 180 | WP_124740979.1 | DUF4222 domain-containing protein | - |
| I0U47_RS07745 (I0U47_07745) | - | 1679756..1680847 (+) | 1092 | WP_124740976.1 | replication protein | - |
| I0U47_RS07750 (I0U47_07750) | - | 1681019..1681726 (+) | 708 | WP_124740975.1 | phage antirepressor KilAC domain-containing protein | - |
| I0U47_RS07755 (I0U47_07755) | - | 1681726..1682751 (+) | 1026 | WP_088207156.1 | DUF968 domain-containing protein | - |
| I0U47_RS07760 (I0U47_07760) | - | 1682779..1683459 (+) | 681 | WP_036901017.1 | bacteriophage antitermination protein Q | - |
| I0U47_RS07765 (I0U47_07765) | - | 1683618..1683812 (+) | 195 | WP_036901019.1 | hypothetical protein | - |
| I0U47_RS07770 (I0U47_07770) | - | 1683885..1684907 (+) | 1023 | WP_124740974.1 | site-specific DNA-methyltransferase | - |
| I0U47_RS07775 (I0U47_07775) | - | 1685151..1685462 (+) | 312 | WP_109829144.1 | hypothetical protein | - |
| I0U47_RS07780 (I0U47_07780) | - | 1685416..1685673 (-) | 258 | WP_109829143.1 | hypothetical protein | - |
| I0U47_RS07785 (I0U47_07785) | - | 1685812..1686081 (+) | 270 | WP_004251611.1 | hypothetical protein | - |
| I0U47_RS07790 (I0U47_07790) | - | 1686081..1686551 (+) | 471 | WP_004251609.1 | lysozyme | - |
| I0U47_RS07795 (I0U47_07795) | - | 1686694..1687155 (+) | 462 | WP_004251606.1 | lysis protein | - |
| I0U47_RS07800 (I0U47_07800) | - | 1688053..1688391 (+) | 339 | WP_004242468.1 | HNH endonuclease | - |
| I0U47_RS07805 (I0U47_07805) | - | 1688510..1688977 (+) | 468 | WP_036905779.1 | phage terminase small subunit P27 family | - |
| I0U47_RS07810 (I0U47_07810) | - | 1688931..1690673 (+) | 1743 | WP_124740973.1 | terminase TerL endonuclease subunit | - |
| I0U47_RS07815 (I0U47_07815) | - | 1690674..1692005 (+) | 1332 | WP_063693233.1 | phage portal protein | - |
| I0U47_RS07820 (I0U47_07820) | - | 1692002..1692853 (+) | 852 | WP_124740972.1 | head maturation protease, ClpP-related | - |
| I0U47_RS07825 (I0U47_07825) | - | 1692865..1694079 (+) | 1215 | WP_058336091.1 | phage major capsid protein | - |
| I0U47_RS07830 (I0U47_07830) | - | 1694125..1694337 (+) | 213 | WP_058336092.1 | hypothetical protein | - |
| I0U47_RS07835 (I0U47_07835) | - | 1694337..1694663 (+) | 327 | WP_058336093.1 | head-tail connector protein | - |
| I0U47_RS07840 (I0U47_07840) | - | 1694672..1695001 (+) | 330 | WP_108716966.1 | phage head closure protein | - |
| I0U47_RS07845 (I0U47_07845) | - | 1694991..1695464 (+) | 474 | WP_108716967.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| I0U47_RS07850 (I0U47_07850) | - | 1695470..1695811 (+) | 342 | WP_004251583.1 | DUF3168 domain-containing protein | - |
| I0U47_RS07855 (I0U47_07855) | - | 1695821..1696486 (+) | 666 | WP_058336217.1 | hypothetical protein | - |
| I0U47_RS07860 (I0U47_07860) | - | 1696551..1696967 (+) | 417 | WP_124740971.1 | hypothetical protein | - |
| I0U47_RS07865 (I0U47_07865) | - | 1697012..1697242 (+) | 231 | WP_004251574.1 | DUF4035 domain-containing protein | - |
| I0U47_RS07870 (I0U47_07870) | - | 1697283..1700558 (+) | 3276 | WP_124740970.1 | phage tail tape measure protein | - |
| I0U47_RS07875 (I0U47_07875) | - | 1700559..1701155 (+) | 597 | WP_049200983.1 | hypothetical protein | - |
| I0U47_RS07880 (I0U47_07880) | - | 1701155..1701736 (+) | 582 | WP_004251564.1 | hypothetical protein | - |
| I0U47_RS07885 (I0U47_07885) | - | 1701748..1702053 (+) | 306 | WP_004251562.1 | hypothetical protein | - |
| I0U47_RS07890 (I0U47_07890) | - | 1702085..1702483 (+) | 399 | WP_004251558.1 | hypothetical protein | - |
| I0U47_RS07895 (I0U47_07895) | - | 1702483..1706208 (+) | 3726 | WP_052169999.1 | DUF1983 domain-containing protein | - |
| I0U47_RS07900 (I0U47_07900) | - | 1706198..1706530 (+) | 333 | WP_017627865.1 | hypothetical protein | - |
| I0U47_RS07905 (I0U47_07905) | - | 1706530..1707216 (+) | 687 | WP_017627864.1 | hypothetical protein | - |
| I0U47_RS07910 (I0U47_07910) | - | 1707213..1707479 (+) | 267 | WP_049202079.1 | hypothetical protein | - |
| I0U47_RS07915 (I0U47_07915) | - | 1707496..1707756 (+) | 261 | WP_004247524.1 | hypothetical protein | - |
| I0U47_RS07920 (I0U47_07920) | - | 1707896..1708366 (+) | 471 | WP_253846620.1 | hypothetical protein | - |
| I0U47_RS07925 (I0U47_07925) | - | 1708459..1708764 (-) | 306 | WP_049211399.1 | helix-turn-helix transcriptional regulator | - |
| I0U47_RS07930 (I0U47_07930) | - | 1709155..1709415 (-) | 261 | WP_230506988.1 | hypothetical protein | - |
| I0U47_RS07935 (I0U47_07935) | - | 1709420..1709650 (-) | 231 | WP_046335367.1 | DNA polymerase III subunit theta | - |
| I0U47_RS07940 (I0U47_07940) | - | 1709928..1710266 (+) | 339 | WP_004243134.1 | Grx4 family monothiol glutaredoxin | - |
| I0U47_RS07945 (I0U47_07945) | tnpA | 1710418..1710834 (-) | 417 | WP_004248160.1 | IS200/IS605 family transposase | - |
| I0U47_RS07950 (I0U47_07950) | - | 1710857..1712065 (+) | 1209 | WP_165544889.1 | RNA-guided endonuclease TnpB family protein | - |
| I0U47_RS07955 (I0U47_07955) | rnt | 1712136..1712774 (-) | 639 | WP_004243132.1 | ribonuclease T | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 17966.31 Da Isoelectric Point: 7.1636
>NTDB_id=507310 I0U47_RS07690 WP_049212214.1 1673054..1673551(-) (ssb) [Proteus mirabilis strain PmBJ020-1]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
Nucleotide
Download Length: 498 bp
>NTDB_id=507310 I0U47_RS07690 WP_049212214.1 1673054..1673551(-) (ssb) [Proteus mirabilis strain PmBJ020-1]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.627 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.545 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.461 |