Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I0U43_RS14955 | Genome accession | NZ_CP065145 |
| Coordinates | 3315698..3316195 (-) | Length | 165 a.a. |
| NCBI ID | WP_049212214.1 | Uniprot ID | A0AAJ4RET5 |
| Organism | Proteus mirabilis strain PmBJ023-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3312409..3358044 | 3315698..3316195 | within | 0 |
Gene organization within MGE regions
Location: 3312409..3358044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I0U43_RS14910 (I0U43_14910) | - | 3312409..3313404 (-) | 996 | WP_124740978.1 | tyrosine-type recombinase/integrase | - |
| I0U43_RS14915 (I0U43_14915) | - | 3313361..3313606 (-) | 246 | WP_049211074.1 | excisionase | - |
| I0U43_RS14920 (I0U43_14920) | - | 3313603..3313941 (-) | 339 | WP_004247455.1 | phage protein NinX family protein | - |
| I0U43_RS14925 (I0U43_14925) | - | 3313934..3314110 (-) | 177 | WP_012367596.1 | hypothetical protein | - |
| I0U43_RS14930 (I0U43_14930) | - | 3314268..3314513 (-) | 246 | WP_049211072.1 | hypothetical protein | - |
| I0U43_RS14935 (I0U43_14935) | - | 3314506..3314775 (-) | 270 | WP_049211071.1 | hypothetical protein | - |
| I0U43_RS14940 (I0U43_14940) | - | 3314775..3314948 (-) | 174 | WP_232467315.1 | hypothetical protein | - |
| I0U43_RS14945 (I0U43_14945) | - | 3314984..3315310 (-) | 327 | WP_036932464.1 | hypothetical protein | - |
| I0U43_RS14950 (I0U43_14950) | - | 3315344..3315682 (-) | 339 | WP_049212213.1 | hypothetical protein | - |
| I0U43_RS14955 (I0U43_14955) | ssb | 3315698..3316195 (-) | 498 | WP_049212214.1 | single-stranded DNA-binding protein | Machinery gene |
| I0U43_RS14960 (I0U43_14960) | - | 3316188..3316721 (-) | 534 | WP_109829194.1 | hypothetical protein | - |
| I0U43_RS14965 (I0U43_14965) | - | 3316778..3317605 (-) | 828 | WP_004247125.1 | DUF2303 family protein | - |
| I0U43_RS14970 (I0U43_14970) | - | 3317671..3318045 (-) | 375 | WP_004247126.1 | hypothetical protein | - |
| I0U43_RS14975 (I0U43_14975) | - | 3318253..3318456 (-) | 204 | WP_049255036.1 | hypothetical protein | - |
| I0U43_RS14980 (I0U43_14980) | - | 3318709..3319446 (-) | 738 | WP_223852282.1 | HIRAN domain-containing protein | - |
| I0U43_RS14985 (I0U43_14985) | - | 3319439..3320374 (-) | 936 | WP_036900929.1 | hypothetical protein | - |
| I0U43_RS14990 (I0U43_14990) | - | 3320456..3321130 (-) | 675 | WP_049213205.1 | S24 family peptidase | - |
| I0U43_RS14995 (I0U43_14995) | - | 3321226..3321453 (+) | 228 | WP_036900931.1 | helix-turn-helix transcriptional regulator | - |
| I0U43_RS15000 (I0U43_15000) | - | 3321492..3321950 (+) | 459 | WP_124740977.1 | YmfL family putative regulatory protein | - |
| I0U43_RS15005 (I0U43_15005) | - | 3322208..3322387 (+) | 180 | WP_124740979.1 | DUF4222 domain-containing protein | - |
| I0U43_RS15010 (I0U43_15010) | - | 3322400..3323491 (+) | 1092 | WP_124740976.1 | replication protein | - |
| I0U43_RS15015 (I0U43_15015) | - | 3323663..3324370 (+) | 708 | WP_124740975.1 | phage antirepressor KilAC domain-containing protein | - |
| I0U43_RS15020 (I0U43_15020) | - | 3324370..3325395 (+) | 1026 | WP_088207156.1 | DUF968 domain-containing protein | - |
| I0U43_RS15025 (I0U43_15025) | - | 3325423..3326103 (+) | 681 | WP_036901017.1 | bacteriophage antitermination protein Q | - |
| I0U43_RS15030 (I0U43_15030) | - | 3326262..3326456 (+) | 195 | WP_036901019.1 | hypothetical protein | - |
| I0U43_RS15035 (I0U43_15035) | - | 3326529..3327551 (+) | 1023 | WP_124740974.1 | site-specific DNA-methyltransferase | - |
| I0U43_RS15040 (I0U43_15040) | - | 3327795..3328106 (+) | 312 | WP_109829144.1 | hypothetical protein | - |
| I0U43_RS15045 (I0U43_15045) | - | 3328060..3328317 (-) | 258 | WP_109829143.1 | hypothetical protein | - |
| I0U43_RS15050 (I0U43_15050) | - | 3328456..3328725 (+) | 270 | WP_004251611.1 | hypothetical protein | - |
| I0U43_RS15055 (I0U43_15055) | - | 3328725..3329195 (+) | 471 | WP_004251609.1 | lysozyme | - |
| I0U43_RS15060 (I0U43_15060) | - | 3329338..3329799 (+) | 462 | WP_004251606.1 | lysis protein | - |
| I0U43_RS15065 (I0U43_15065) | - | 3330697..3331035 (+) | 339 | WP_004242468.1 | HNH endonuclease | - |
| I0U43_RS15070 (I0U43_15070) | - | 3331154..3331621 (+) | 468 | WP_036905779.1 | phage terminase small subunit P27 family | - |
| I0U43_RS15075 (I0U43_15075) | - | 3331575..3333317 (+) | 1743 | WP_124740973.1 | terminase TerL endonuclease subunit | - |
| I0U43_RS15080 (I0U43_15080) | - | 3333318..3334649 (+) | 1332 | WP_063693233.1 | phage portal protein | - |
| I0U43_RS15085 (I0U43_15085) | - | 3334646..3335497 (+) | 852 | WP_124740972.1 | head maturation protease, ClpP-related | - |
| I0U43_RS15090 (I0U43_15090) | - | 3335509..3336723 (+) | 1215 | WP_058336091.1 | phage major capsid protein | - |
| I0U43_RS15095 (I0U43_15095) | - | 3336769..3336981 (+) | 213 | WP_058336092.1 | hypothetical protein | - |
| I0U43_RS15100 (I0U43_15100) | - | 3336981..3337307 (+) | 327 | WP_058336093.1 | head-tail connector protein | - |
| I0U43_RS15105 (I0U43_15105) | - | 3337316..3337645 (+) | 330 | WP_108716966.1 | phage head closure protein | - |
| I0U43_RS15110 (I0U43_15110) | - | 3337638..3338108 (+) | 471 | WP_253846618.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| I0U43_RS15115 (I0U43_15115) | - | 3338114..3338455 (+) | 342 | WP_004251583.1 | DUF3168 domain-containing protein | - |
| I0U43_RS15120 (I0U43_15120) | - | 3338465..3339130 (+) | 666 | WP_058336217.1 | hypothetical protein | - |
| I0U43_RS15125 (I0U43_15125) | - | 3339195..3339611 (+) | 417 | WP_124740971.1 | hypothetical protein | - |
| I0U43_RS15130 (I0U43_15130) | - | 3339656..3339886 (+) | 231 | WP_004251574.1 | DUF4035 domain-containing protein | - |
| I0U43_RS15135 (I0U43_15135) | - | 3339927..3343202 (+) | 3276 | WP_124740970.1 | phage tail tape measure protein | - |
| I0U43_RS15140 (I0U43_15140) | - | 3343203..3343799 (+) | 597 | WP_049200983.1 | hypothetical protein | - |
| I0U43_RS15145 (I0U43_15145) | - | 3343799..3344380 (+) | 582 | WP_004251564.1 | hypothetical protein | - |
| I0U43_RS15150 (I0U43_15150) | - | 3344392..3344697 (+) | 306 | WP_004251562.1 | hypothetical protein | - |
| I0U43_RS15155 (I0U43_15155) | - | 3344729..3345127 (+) | 399 | WP_004251558.1 | hypothetical protein | - |
| I0U43_RS15160 (I0U43_15160) | - | 3345127..3348852 (+) | 3726 | WP_052169999.1 | DUF1983 domain-containing protein | - |
| I0U43_RS15165 (I0U43_15165) | - | 3348842..3349174 (+) | 333 | WP_017627865.1 | hypothetical protein | - |
| I0U43_RS15170 (I0U43_15170) | - | 3349174..3349860 (+) | 687 | WP_017627864.1 | hypothetical protein | - |
| I0U43_RS15175 (I0U43_15175) | - | 3349857..3350123 (+) | 267 | WP_049202079.1 | hypothetical protein | - |
| I0U43_RS15180 (I0U43_15180) | - | 3350140..3350400 (+) | 261 | WP_004247524.1 | hypothetical protein | - |
| I0U43_RS15185 (I0U43_15185) | - | 3350540..3351010 (+) | 471 | WP_253846620.1 | hypothetical protein | - |
| I0U43_RS15190 (I0U43_15190) | - | 3351103..3351408 (-) | 306 | WP_049211399.1 | helix-turn-helix transcriptional regulator | - |
| I0U43_RS15195 (I0U43_15195) | - | 3351799..3352059 (-) | 261 | WP_230506988.1 | hypothetical protein | - |
| I0U43_RS15200 (I0U43_15200) | - | 3352064..3352294 (-) | 231 | WP_046335367.1 | DNA polymerase III subunit theta | - |
| I0U43_RS15205 (I0U43_15205) | - | 3352572..3352910 (+) | 339 | WP_004243134.1 | Grx4 family monothiol glutaredoxin | - |
| I0U43_RS15210 (I0U43_15210) | tnpA | 3353062..3353478 (-) | 417 | WP_012368599.1 | IS200/IS605 family transposase | - |
| I0U43_RS15215 (I0U43_15215) | - | 3353501..3354709 (+) | 1209 | WP_196242043.1 | RNA-guided endonuclease TnpB family protein | - |
| I0U43_RS15220 (I0U43_15220) | rnt | 3354780..3355418 (-) | 639 | WP_004243132.1 | ribonuclease T | - |
| I0U43_RS15225 (I0U43_15225) | gloA | 3355514..3355921 (-) | 408 | WP_004248157.1 | lactoylglutathione lyase | - |
| I0U43_RS15230 (I0U43_15230) | - | 3356102..3356341 (+) | 240 | WP_004243130.1 | DUF1289 domain-containing protein | - |
| I0U43_RS15235 (I0U43_15235) | slyA | 3356804..3357232 (+) | 429 | WP_004243123.1 | transcriptional regulator SlyA | - |
| I0U43_RS15240 (I0U43_15240) | - | 3357577..3358044 (-) | 468 | WP_004243121.1 | glycine zipper 2TM domain-containing protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 17966.31 Da Isoelectric Point: 7.1636
>NTDB_id=507301 I0U43_RS14955 WP_049212214.1 3315698..3316195(-) (ssb) [Proteus mirabilis strain PmBJ023-2]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
Nucleotide
Download Length: 498 bp
>NTDB_id=507301 I0U43_RS14955 WP_049212214.1 3315698..3316195(-) (ssb) [Proteus mirabilis strain PmBJ023-2]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.627 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.545 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.461 |