Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NT08PM_RS08975 Genome accession   NC_017764
Coordinates   1921817..1923346 (-) Length   509 a.a.
NCBI ID   WP_014668442.1    Uniprot ID   A0A849CR08
Organism   Pasteurella multocida subsp. multocida str. 3480     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1916817..1928346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT08PM_RS08960 (NT08PM_1835) - 1917100..1917942 (+) 843 WP_014668440.1 divergent polysaccharide deacetylase family protein -
  NT08PM_RS08965 (NT08PM_1836) - 1917963..1918649 (+) 687 WP_005757690.1 hypothetical protein -
  NT08PM_RS08970 (NT08PM_1837) - 1918757..1921318 (-) 2562 WP_014668441.1 TonB-dependent receptor domain-containing protein -
  NT08PM_RS08975 (NT08PM_1838) comM 1921817..1923346 (-) 1530 WP_014668442.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NT08PM_RS08980 (NT08PM_1839) yihA 1923454..1924071 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NT08PM_RS08985 (NT08PM_1840) - 1924182..1925051 (+) 870 WP_014668443.1 VirK/YbjX family protein -
  NT08PM_RS08990 (NT08PM_1841) trmL 1925126..1925602 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  NT08PM_RS08995 (NT08PM_1842) - 1925709..1926650 (-) 942 WP_014668444.1 hypothetical protein -
  NT08PM_RS09000 (NT08PM_1843) - 1926673..1928187 (-) 1515 WP_014668445.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55898.28 Da        Isoelectric Point: 9.6874

>NTDB_id=50719 NT08PM_RS08975 WP_014668442.1 1921817..1923346(-) (comM) [Pasteurella multocida subsp. multocida str. 3480]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTSLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAVDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=50719 NT08PM_RS08975 WP_014668442.1 1921817..1923346(-) (comM) [Pasteurella multocida subsp. multocida str. 3480]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCTGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCTCGTTACCTTTAGCCTCAGAACTGCCCACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGACCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCCTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCACTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGAGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGGTGGATAGGCTGTTACAGAAGTTATC
TGCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A849CR08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.615

99.607

0.843
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

65.815

100

0.658
  comM Vibrio campbellii strain DS40M4

64.922

100

0.658
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47

Multiple sequence alignment