Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SANR_RS02295 Genome accession   NC_022239
Coordinates   445351..446010 (-) Length   219 a.a.
NCBI ID   WP_003033966.1    Uniprot ID   I0SK93
Organism   Streptococcus anginosus C238     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440351..451010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS02270 (SANR_0445) rlmN 440563..441646 (+) 1084 Protein_412 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SANR_RS02275 (SANR_0446) - 441639..442169 (+) 531 WP_003035190.1 VanZ family protein -
  SANR_RS11075 - 442377..443728 (+) 1352 WP_148290568.1 IS3 family transposase -
  SANR_RS02290 (SANR_0449) trpB 444044..445179 (+) 1136 Protein_415 tryptophan synthase subunit beta -
  SANR_RS02295 (SANR_0450) cclA/cilC 445351..446010 (-) 660 WP_003033966.1 prepilin peptidase Machinery gene
  SANR_RS02300 (SANR_0451) - 446164..446691 (+) 528 WP_003033883.1 Dps family protein -
  SANR_RS02305 (SANR_0452) - 446965..447189 (+) 225 WP_003025724.1 YqgQ family protein -
  SANR_RS02310 (SANR_0453) - 447183..447563 (+) 381 WP_020999491.1 rhodanese-like domain-containing protein -
  SANR_RS02315 (SANR_0454) - 447584..448309 (-) 726 WP_020999492.1 pseudouridine synthase -
  SANR_RS02320 (SANR_0455) typA 448486..450327 (+) 1842 WP_003032385.1 translational GTPase TypA -
  SANR_RS02325 (SANR_0456) - 450392..450676 (+) 285 WP_003033862.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24815.14 Da        Isoelectric Point: 8.2951

>NTDB_id=50719 SANR_RS02295 WP_003033966.1 445351..446010(-) (cclA/cilC) [Streptococcus anginosus C238]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIIGPSSHCNACGQKLAPRDLVPVLSQLINRLRCRFCQSKIPIRYLVLEIAIG
SLFLATSMGYLSIGQLVLLVMGITLSLYDQREQEYPLLIWLFFHFLLLFLTGFNLLMISFLTLGIVAFFFDLRIGAGDFL
FLASCSTVFKLTEILWLIQIASLVGLCLFCLKKRKDRIAFVPCLLIGVIVLLMYELLLQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=50719 SANR_RS02295 WP_003033966.1 445351..446010(-) (cclA/cilC) [Streptococcus anginosus C238]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGCATTGTAGCTTCCTTTTTAGGGCTGGTCGTTGATCGTTTCCCTGAACA
GTCTATTATCGGTCCTTCCAGTCATTGTAATGCTTGTGGACAGAAATTAGCACCTCGCGATTTAGTCCCTGTCCTTTCTC
AGCTTATCAATCGACTGCGTTGTCGGTTTTGTCAGTCAAAAATTCCCATCCGCTATTTGGTATTAGAAATCGCTATCGGA
TCTCTCTTTCTTGCAACTTCTATGGGCTATCTAAGTATCGGTCAGCTTGTCCTACTTGTAATGGGCATAACCTTATCCCT
TTACGATCAAAGAGAACAAGAATATCCTCTGCTTATTTGGCTGTTTTTCCATTTCCTTCTTCTCTTTTTAACAGGTTTCA
ATCTTCTAATGATTAGTTTTTTAACCCTTGGAATAGTAGCTTTTTTCTTTGACTTACGAATTGGCGCAGGAGACTTTCTT
TTTCTAGCTTCTTGTTCAACTGTTTTCAAGTTGACAGAGATTCTTTGGCTGATTCAAATTGCCAGCTTAGTGGGCTTATG
TCTCTTTTGCTTAAAAAAGAGAAAAGACAGGATAGCTTTCGTTCCCTGTCTTTTGATTGGAGTGATTGTTCTACTTATGT
ATGAGTTGTTACTTCAATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SK93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

57.339

99.543

0.571
  cclA/cilC Streptococcus mitis SK321

56.881

99.543

0.566
  cclA/cilC Streptococcus pneumoniae TIGR4

56.422

99.543

0.562
  cclA/cilC Streptococcus pneumoniae Rx1

55.963

99.543

0.557
  cclA/cilC Streptococcus pneumoniae D39

55.963

99.543

0.557
  cclA/cilC Streptococcus pneumoniae R6

55.963

99.543

0.557

Multiple sequence alignment