Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   VB13_RS06210 Genome accession   NZ_CP077685
Coordinates   1247711..1248376 (-) Length   221 a.a.
NCBI ID   WP_012560853.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242711..1253376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS06205 (VB13_06400) hpf 1247083..1247631 (-) 549 WP_009880471.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VB13_RS06210 (VB13_06405) comFC/cflB 1247711..1248376 (-) 666 WP_012560853.1 ComF family protein Machinery gene
  VB13_RS06215 (VB13_06410) comFA/cflA 1248348..1249673 (-) 1326 WP_009880469.1 DEAD/DEAH box helicase Machinery gene
  VB13_RS06220 (VB13_06415) - 1249729..1250361 (+) 633 WP_009880468.1 YigZ family protein -
  VB13_RS06225 (VB13_06420) cysK 1250489..1251430 (+) 942 WP_009880467.1 cysteine synthase A -
  VB13_RS06230 (VB13_06425) - 1251448..1251825 (-) 378 WP_009880466.1 S1 RNA-binding domain-containing protein -
  VB13_RS06235 (VB13_06430) - 1251825..1253225 (-) 1401 WP_009880465.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25189.49 Da        Isoelectric Point: 9.4626

>NTDB_id=506883 VB13_RS06210 WP_012560853.1 1247711..1248376(-) (comFC/cflB) [Streptococcus pyogenes strain M49 591]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVIYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=506883 VB13_RS06210 WP_012560853.1 1247711..1248376(-) (comFC/cflB) [Streptococcus pyogenes strain M49 591]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTATCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412