Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KRR37_RS25490 Genome accession   NZ_CP077652
Coordinates   5621488..5623110 (+) Length   540 a.a.
NCBI ID   WP_248871481.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5616488..5628110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS25455 (KRR37_25265) lepB 5616542..5617315 (+) 774 WP_248871478.1 signal peptidase I -
  KRR37_RS25460 (KRR37_25270) lepB 5617308..5618450 (+) 1143 WP_248871479.1 signal peptidase I -
  KRR37_RS25465 (KRR37_25275) lepB 5618353..5619267 (+) 915 WP_127466694.1 signal peptidase I -
  KRR37_RS25470 (KRR37_25280) lepB 5619318..5620070 (+) 753 WP_248871480.1 signal peptidase I -
  KRR37_RS25475 (KRR37_25285) - 5620067..5620555 (+) 489 WP_127466573.1 NUDIX hydrolase -
  KRR37_RS25480 (KRR37_25290) - 5620620..5620928 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  KRR37_RS25485 (KRR37_25295) - 5621129..5621488 (+) 360 WP_070199269.1 YraN family protein -
  KRR37_RS25490 (KRR37_25300) comM 5621488..5623110 (+) 1623 WP_248871481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KRR37_RS25495 (KRR37_25305) dprA 5623341..5624456 (+) 1116 WP_127466571.1 DNA-processing protein DprA -
  KRR37_RS25500 (KRR37_25310) whiG 5624746..5625582 (+) 837 WP_248871482.1 RNA polymerase sigma factor WhiG -
  KRR37_RS25505 (KRR37_25315) - 5625679..5626236 (+) 558 WP_018488723.1 TetR/AcrR family transcriptional regulator -
  KRR37_RS25510 (KRR37_25320) - 5626389..5626925 (-) 537 WP_248872373.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55786.47 Da        Isoelectric Point: 7.4239

>NTDB_id=506738 KRR37_RS25490 WP_248871481.1 5621488..5623110(+) (comM) [Streptomyces sp. HNA39]
MGYARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLIESRDRVRAAVTNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERLDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAVEAGYRQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPDEPADDRGRPDAMLAGLMVPGTGLGAGLAPASVRGEGHTPDLADVAGQPRPRKALEVAAAGGHHLL
LSGPPGAGKTMLAERLPAVLPPLTRPESLEVTAVHSVAGILLPGEPLVSRAPYCAPHHSATMQSLVGGGNGMPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARAAGVVRLPARFLMMLAANPCPCGRHTLTGAGCECPPSVVRRYQAR
LSGPLLDRVDLRVEVEPVDRADLLKQGGRGEPTAVVAARVREARVRAAERLAGTPWTTNSEVPGHELRTRLLAAPGALAA
AERDLERGLLTARGLDRVLRVAWTVADLRGAPRPEARDVAVALELRTGIQRGAPMEAGAL

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=506738 KRR37_RS25490 WP_248871481.1 5621488..5623110(+) (comM) [Streptomyces sp. HNA39]
ATGGGGTACGCACGGGCGTGTTCCGTGGCGCTGGTGGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCGGACCTGGAGCC
CGGGGTGGCGGCCTTCACGCTGGTCGGGCTGCCGGACAAGAGCCTGATCGAGAGCCGCGACCGGGTGCGGGCCGCGGTGA
CGAACTCCGGAGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCTCCCCGGCCTCGGTCCCCAAGAGCGGTTCGGGG
TTCGACCTCGCCGTCGCGTGCGCCGTCCTCGGGGCGGCGGAGCGGCTGGACCCCGCCGCCATCGCGGACGTGGTGATGAT
CGGGGAACTGGGGCTCGACGGCCGGGTCCGTCCCGTACGGGGGGTGCTGCCCGCCGTCCTCGCGGCGGTCGAGGCCGGAT
ACCGGCAGGTCGTCGTCCCCGAGCAGACGGCCGGGGAGGCCGCCCTGGTGCCGGGCGTCTCGGTCCTCGGCGTCCGGAGC
CTGCGCCAGCTCATCGCCGTCCTCTGCGACGAGCCGGTCCCCGACGAGCCCGCCGACGACCGGGGGCGTCCCGACGCCAT
GCTCGCCGGACTCATGGTCCCGGGCACCGGCCTCGGCGCCGGTCTCGCCCCCGCCTCGGTGCGCGGCGAGGGACACACCC
CCGACCTGGCGGACGTGGCGGGCCAGCCGCGCCCCCGCAAGGCCCTGGAGGTGGCGGCGGCCGGGGGACACCATCTGCTC
CTCTCCGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCCGAGCGGCTTCCGGCGGTCCTGCCGCCGCTGACCCGGCCGGA
GTCCCTCGAAGTGACGGCGGTCCACTCCGTGGCGGGCATCCTTCTCCCGGGTGAACCGTTGGTCTCCCGGGCGCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGTCCCTGGTGGGCGGCGGCAACGGGATGCCGAGACCAGGGGCGGTCTCACTC
GCTCACCGAGGGGTCCTCTTTCTGGATGAGGCACCCGAATTTTCCGGAAAAGCCCTGGATGCGCTGCGCCAGCCGCTGGA
GTCGGGTCACGTGGTGGTGGCGCGGGCGGCGGGGGTGGTGCGGCTGCCGGCCAGGTTCCTGATGATGCTGGCCGCCAACC
CGTGCCCGTGCGGCCGGCACACCCTCACGGGCGCGGGCTGCGAGTGCCCGCCCTCGGTGGTCCGCCGCTACCAGGCCCGC
CTCTCCGGGCCCCTGCTCGACCGGGTGGACCTGCGGGTCGAGGTGGAGCCGGTCGACCGCGCGGACCTGCTGAAGCAGGG
CGGCCGGGGCGAGCCGACGGCCGTGGTGGCGGCACGGGTGCGGGAGGCCAGGGTCCGGGCGGCCGAGCGGCTGGCGGGGA
CGCCCTGGACCACCAACAGCGAGGTCCCGGGCCACGAACTGCGCACCCGCCTGCTGGCCGCCCCCGGAGCCCTGGCCGCC
GCCGAACGCGACCTGGAACGCGGCCTCCTCACGGCCCGGGGCCTGGACCGGGTCCTGCGGGTCGCCTGGACGGTCGCCGA
CCTCCGGGGCGCGCCCAGACCGGAGGCCCGGGACGTGGCGGTGGCCCTGGAGCTGCGGACGGGCATCCAGCGCGGGGCAC
CTATGGAGGCGGGGGCGCTGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.016

94.815

0.389
  comM Vibrio cholerae strain A1552

41.016

94.815

0.389
  comM Vibrio campbellii strain DS40M4

39.924

97.407

0.389
  comM Acinetobacter baylyi ADP1

39.057

98.148

0.383
  comM Haemophilus influenzae Rd KW20

38.973

97.407

0.38
  comM Glaesserella parasuis strain SC1401

37.218

98.519

0.367