Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I2436_RS06775 Genome accession   NZ_CP065060
Coordinates   1443993..1444715 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438993..1449715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS06750 (GDAKBCAL_01354) pstB 1439158..1439910 (-) 753 WP_021320977.1 phosphate ABC transporter ATP-binding protein PstB -
  I2436_RS06755 (GDAKBCAL_01355) pstA 1439912..1440727 (-) 816 WP_021320978.1 phosphate ABC transporter permease PstA -
  I2436_RS06760 (GDAKBCAL_01356) pstC 1440720..1441583 (-) 864 WP_206152706.1 phosphate ABC transporter permease subunit PstC -
  I2436_RS06765 (GDAKBCAL_01357) - 1441653..1442525 (-) 873 WP_021320979.1 substrate-binding domain-containing protein -
  I2436_RS06770 (GDAKBCAL_01358) - 1442684..1444009 (-) 1326 WP_041785614.1 ATP-binding protein -
  I2436_RS06775 (GDAKBCAL_01359) vicR 1443993..1444715 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  I2436_RS06780 (GDAKBCAL_01360) - 1444887..1445042 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  I2436_RS06785 (GDAKBCAL_01361) - 1445083..1445985 (+) 903 WP_021320980.1 permease -
  I2436_RS06790 (GDAKBCAL_01362) - 1445985..1446800 (+) 816 WP_206152707.1 TIGR03943 family protein -
  I2436_RS06795 (GDAKBCAL_01363) - 1446985..1448406 (-) 1422 WP_043031097.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=506549 I2436_RS06775 WP_012677660.1 1443993..1444715(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=506549 I2436_RS06775 WP_012677660.1 1443993..1444715(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396