Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MY9_RS20835 Genome accession   NC_017743
Coordinates   4103703..4104221 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. JS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4098703..4109221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS20805 (MY9_4224) - 4099209..4100564 (+) 1356 WP_014666133.1 MFS transporter -
  MY9_RS20810 (MY9_4225) - 4100598..4101152 (-) 555 WP_014666134.1 sugar O-acetyltransferase -
  MY9_RS20815 (MY9_4226) - 4101170..4101550 (-) 381 WP_014666135.1 VOC family protein -
  MY9_RS20820 (MY9_4227) - 4101605..4102540 (-) 936 WP_014666136.1 LacI family DNA-binding transcriptional regulator -
  MY9_RS20825 (MY9_4229) xth 4102601..4103359 (-) 759 WP_014666138.1 exodeoxyribonuclease III -
  MY9_RS20830 (MY9_4230) rpsR 4103420..4103659 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MY9_RS20835 (MY9_4231) ssbA 4103703..4104221 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MY9_RS20840 (MY9_4232) rpsF 4104262..4104549 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  MY9_RS20845 (MY9_4233) ychF 4104660..4105760 (-) 1101 WP_014666140.1 redox-regulated ATPase YchF -
  MY9_RS20850 (MY9_4234) - 4105887..4107890 (-) 2004 WP_014666141.1 molybdopterin-dependent oxidoreductase -
  MY9_RS20855 (MY9_4235) - 4107941..4108147 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=50648 MY9_RS20835 WP_003219228.1 4103703..4104221(-) (ssbA) [Bacillus sp. JS]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=50648 MY9_RS20835 WP_003219228.1 4103703..4104221(-) (ssbA) [Bacillus sp. JS]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGATGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment