Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I2435_RS01525 Genome accession   NZ_CP065059
Coordinates   295273..296772 (+) Length   499 a.a.
NCBI ID   WP_014623463.1    Uniprot ID   A0A380JT11
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 290273..301772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS01515 (JFMEOBDD_00304) pbp3 291687..292925 (-) 1239 WP_206156574.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2435_RS01520 (JFMEOBDD_00305) amiA3 293233..295209 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  I2435_RS01525 (JFMEOBDD_00306) amiC 295273..296772 (+) 1500 WP_014623463.1 ABC transporter permease Regulator
  I2435_RS01530 (JFMEOBDD_00307) amiD 296772..297698 (+) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2435_RS01535 (JFMEOBDD_00308) amiE 297707..298777 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2435_RS01540 (JFMEOBDD_00309) amiF 298770..299693 (+) 924 WP_206156575.1 ATP-binding cassette domain-containing protein Regulator
  I2435_RS01545 (JFMEOBDD_00310) - 300091..301254 (-) 1164 WP_012677391.1 IS30-like element ISSeq6 family transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55634.10 Da        Isoelectric Point: 10.1102

>NTDB_id=506469 I2435_RS01525 WP_014623463.1 295273..296772(+) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPAVTTAPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIITFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=506469 I2435_RS01525 WP_014623463.1 295273..296772(+) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGAAAAAATACATATTTGAACGCATATTAAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACCATTGT
TTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAGATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTGCTGTAACAACTGCACCAACCAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCGGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCGGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTTCCATTTATCCATCAAAATATCATAACCTTTGATTTGGGAGTGTCCTATCCAACCTATGCCAACATTCCGGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAAGAGGTCACCTTCCCAACAGGCAAAACAAAGCTGTCTTCA
ATCGATATTTACTCTCGAACCTATAAAACTCCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACTAATACACAAAATAACTATGCAGAACCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGC
TGTCCTATCTTTTTGGTCTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGCTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTACTAGGAGCAGGAGATGTTAGGTCTTATGTGCTACCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGGCGCTATATTGTGGACCTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTCGAGATTTCAAAAAATCACCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAGGCCAT
TGTCGGAACAATTGCCGGTGCAACCTTGACAGAGACGGTGTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACGATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JT11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.124

100

0.621
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619