Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I2435_RS01535 Genome accession   NZ_CP065059
Coordinates   297707..298777 (+) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 292707..303777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS01520 (JFMEOBDD_00305) amiA3 293233..295209 (+) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  I2435_RS01525 (JFMEOBDD_00306) amiC 295273..296772 (+) 1500 WP_014623463.1 ABC transporter permease Regulator
  I2435_RS01530 (JFMEOBDD_00307) amiD 296772..297698 (+) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2435_RS01535 (JFMEOBDD_00308) amiE 297707..298777 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2435_RS01540 (JFMEOBDD_00309) amiF 298770..299693 (+) 924 WP_206156575.1 ATP-binding cassette domain-containing protein Regulator
  I2435_RS01545 (JFMEOBDD_00310) - 300091..301254 (-) 1164 WP_012677391.1 IS30-like element ISSeq6 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=506471 I2435_RS01535 WP_012516279.1 297707..298777(+) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=506471 I2435_RS01535 WP_012516279.1 297707..298777(+) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTACAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCAGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAAGACTGGGAAGCTATTCGCGGCTCTAAAATTGCCACTATCTTTCAGGACCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGGGTCGGTATTCCTGAGCCAGAAAAGCGTTTTGGAGAGTATCCTTTCCAATAT
TCTGGCGGTATGAGACAGCGTATTGTTATTGCCATTGCCCTAGCTTGTAAGCCAGATATTCTGATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGACCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGATAAGGTTGCTGTTATGTATGCAGGGGAGATTATCGAG
TATGGGAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATCCCAGGGACACCTCCGTCCCTATACAAGCCAATTGTTGGTGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAGCCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528