Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JGX27_RS11000 Genome accession   NZ_CP077423
Coordinates   2199108..2199701 (-) Length   197 a.a.
NCBI ID   WP_009855172.1    Uniprot ID   A0A060RFZ7
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2194108..2204701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS10970 (JGX27_10970) cinA 2194112..2195371 (-) 1260 WP_009855166.1 competence/damage-inducible protein A Machinery gene
  JGX27_RS10975 (JGX27_10975) - 2195503..2196693 (-) 1191 WP_009855167.1 MFS transporter -
  JGX27_RS10980 (JGX27_10980) - 2196853..2197026 (-) 174 WP_009855168.1 hypothetical protein -
  JGX27_RS10985 (JGX27_10985) - 2197076..2197540 (-) 465 WP_009855169.1 hypothetical protein -
  JGX27_RS10990 (JGX27_10990) - 2197610..2198017 (-) 408 WP_009855170.1 hypothetical protein -
  JGX27_RS10995 (JGX27_10995) - 2198180..2199034 (+) 855 WP_009855171.1 helix-turn-helix transcriptional regulator -
  JGX27_RS11000 (JGX27_11000) ruvA 2199108..2199701 (-) 594 WP_009855172.1 Holliday junction branch migration protein RuvA Machinery gene
  JGX27_RS11005 (JGX27_11005) hexB 2199703..2201646 (-) 1944 WP_009855173.1 DNA mismatch repair endonuclease MutL Machinery gene
  JGX27_RS11010 (JGX27_11010) hexA 2201763..2204333 (-) 2571 WP_009855174.1 DNA mismatch repair protein MutS Machinery gene
  JGX27_RS11015 (JGX27_11015) - 2204320..2204676 (-) 357 WP_009855175.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21768.17 Da        Isoelectric Point: 5.3568

>NTDB_id=506368 JGX27_RS11000 WP_009855172.1 2199108..2199701(-) (ruvA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MYDYIKGKLTKITAKYIVVEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTATNEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=506368 JGX27_RS11000 WP_009855172.1 2199108..2199701(-) (ruvA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTGTCGAGGCTGGAGGGCTGGGCTATAT
TGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGCGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAATTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATGGCAAAGCTTCTCAGACAAAAACAGCTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCACTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTCTTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RFZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

69.192

100

0.695
  ruvA Streptococcus pneumoniae D39

69.192

100

0.695
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.421