Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   JGX27_RS03140 Genome accession   NZ_CP077423
Coordinates   573659..574309 (-) Length   216 a.a.
NCBI ID   WP_009853671.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568659..579309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS03115 (JGX27_03115) trpC 568851..569618 (+) 768 WP_009853666.1 indole-3-glycerol phosphate synthase TrpC -
  JGX27_RS03120 (JGX27_03120) - 569605..570186 (+) 582 WP_009853667.1 phosphoribosylanthranilate isomerase -
  JGX27_RS03125 (JGX27_03125) trpB 570183..571385 (+) 1203 WP_009853668.1 tryptophan synthase subunit beta -
  JGX27_RS03130 (JGX27_03130) trpA 571389..572171 (+) 783 WP_009853669.1 tryptophan synthase subunit alpha -
  JGX27_RS03135 (JGX27_03135) - 572236..573576 (-) 1341 WP_009853670.1 Nramp family divalent metal transporter -
  JGX27_RS03140 (JGX27_03140) cclA/cilC 573659..574309 (-) 651 WP_009853671.1 A24 family peptidase Machinery gene
  JGX27_RS03145 (JGX27_03145) - 574439..574969 (+) 531 WP_009853672.1 DNA starvation/stationary phase protection protein -
  JGX27_RS03150 (JGX27_03150) - 575210..575476 (+) 267 WP_009853673.1 hypothetical protein -
  JGX27_RS03155 (JGX27_03155) - 575569..577185 (+) 1617 WP_043878525.1 ABC transporter ATP-binding protein -
  JGX27_RS03160 (JGX27_03160) - 577197..578048 (+) 852 WP_043878526.1 McbB family protein -
  JGX27_RS03165 (JGX27_03165) - 578075..578662 (+) 588 WP_172855746.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24741.69 Da        Isoelectric Point: 6.0583

>NTDB_id=506302 JGX27_RS03140 WP_009853671.1 573659..574309(-) (cclA/cilC) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MDILLFFFLGASIASFLSLIVDRFPEKSIIFPASHCDSCGKQLAVRDLIPIFSQLINHSRCRFCHTKIPFWYGLLELYFG
VIVVLYYCALLSLDQVFILFFSTTLSLYDLKCQEFPLLVWLLPSIFLLFVTPINALAIILLAFGIMAELIDLKIGSGDFF
YLASLSLLLDLQTILWIIELGSLSGIIYYFFQTNKRIPFVPFLFLGYLILSIFNHT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=506302 JGX27_RS03140 WP_009853671.1 573659..574309(-) (cclA/cilC) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGACATTTTATTATTCTTTTTTCTAGGGGCTTCTATTGCTTCTTTTCTTAGTTTAATCGTTGATCGATTTCCCGAAAA
ATCAATCATTTTTCCTGCCAGTCATTGTGATTCTTGTGGAAAACAACTTGCCGTTCGTGATTTGATTCCCATTTTTTCTC
AACTGATAAATCATTCACGTTGTCGTTTTTGCCACACCAAAATTCCTTTCTGGTATGGGCTGTTAGAGCTTTATTTTGGG
GTCATTGTCGTACTTTACTATTGCGCACTTCTCTCACTCGACCAAGTTTTTATCTTGTTTTTTAGCACAACTCTTAGTCT
TTATGACTTGAAATGTCAAGAGTTTCCATTGTTGGTTTGGCTCCTTCCAAGTATTTTTTTGCTTTTTGTCACGCCGATTA
ATGCGCTAGCTATTATTCTTTTGGCTTTTGGGATAATGGCAGAGCTGATTGATTTGAAAATCGGTAGCGGTGATTTTTTC
TACCTTGCCAGTTTGAGTCTGCTTCTTGACCTTCAAACCATTTTATGGATTATCGAGCTTGGCTCTCTTTCAGGTATTAT
TTACTACTTTTTCCAGACAAATAAACGGATTCCCTTTGTGCCATTTTTATTTTTAGGATATCTAATTTTGTCTATTTTTA
ACCATACTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

46.117

95.37

0.44
  cclA/cilC Streptococcus pneumoniae Rx1

45.545

93.519

0.426
  cclA/cilC Streptococcus pneumoniae D39

45.545

93.519

0.426
  cclA/cilC Streptococcus pneumoniae R6

45.545

93.519

0.426
  cclA/cilC Streptococcus pneumoniae TIGR4

45.545

93.519

0.426
  cclA/cilC Streptococcus mitis NCTC 12261

44.554

93.519

0.417