Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IVB58_RS17260 Genome accession   NZ_CP065051
Coordinates   3643002..3643583 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3638002..3648583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS17240 (IVB58_17195) - 3639622..3639759 (-) 138 Protein_3359 helix-turn-helix transcriptional regulator -
  IVB58_RS17245 (IVB58_17200) - 3639816..3640100 (+) 285 WP_228136616.1 hypothetical protein -
  IVB58_RS17250 (IVB58_17205) - 3640147..3641904 (+) 1758 WP_046023792.1 AAA family ATPase -
  IVB58_RS17255 (IVB58_17210) - 3641901..3642743 (+) 843 WP_052691362.1 hypothetical protein -
  IVB58_RS17260 (IVB58_17215) ssb 3643002..3643583 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  IVB58_RS17265 (IVB58_17220) - 3643635..3644999 (-) 1365 WP_000980460.1 MFS transporter -
  IVB58_RS17270 (IVB58_17225) - 3645146..3646228 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  IVB58_RS17275 (IVB58_17230) tenA 3646491..3647165 (+) 675 WP_000899418.1 thiaminase II -
  IVB58_RS17280 (IVB58_17235) - 3647215..3647556 (-) 342 WP_000263326.1 GlpM family protein -
  IVB58_RS17285 (IVB58_17240) - 3647609..3647962 (-) 354 WP_005130631.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=506248 IVB58_RS17260 WP_001215080.1 3643002..3643583(-) (ssb) [Acinetobacter baumannii strain 2016GDAB1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=506248 IVB58_RS17260 WP_001215080.1 3643002..3643583(-) (ssb) [Acinetobacter baumannii strain 2016GDAB1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394