Detailed information NTG0506221

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: IVB58_RS04210
• Genome accession: NZ_CP065051
• Coordinates: 886759..887877 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347037.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 2016GDAB1
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 881759..892877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IVB58_RS04180 (IVB58_04165)	-	882588..883436 (+)	849	Protein_798	class II glutamine amidotransferase	-
IVB58_RS04185 (IVB58_04170)	-	883689..884144 (+)	456	WP_000782976.1	bacteriohemerythrin	-
IVB58_RS04190 (IVB58_04175)	-	884297..885364 (+)	1068	WP_029777564.1	membrane protein	-
IVB58_RS04195 (IVB58_04180)	-	885364..885687 (+)	324	WP_000442589.1	RnfH family protein	-
IVB58_RS04200 (IVB58_04185)	bamE	885742..886140 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
IVB58_RS04205 (IVB58_04190)	fur	886252..886689 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
IVB58_RS04210 (IVB58_04195)	pilU	886759..887877 (-)	1119	WP_000347037.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
IVB58_RS04215 (IVB58_04200)	pilT	887905..888942 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
IVB58_RS04220 (IVB58_04205)	-	889069..889761 (+)	693	WP_001108505.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41919.10 Da
• Isoelectric Point: 6.6943

>NTDB_id=506221 IVB58_RS04210 WP_000347037.1 886759..887877(-) (pilU) [Acinetobacter baumannii strain 2016GDAB1]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFADTRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=506221 IVB58_RS04210 WP_000347037.1 886759..887877(-) (pilU) [Acinetobacter baumannii strain 2016GDAB1]
ATGGATTTTAATGACCTGCTCAACCTGATGGTTGAAAAGAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAATGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGACACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACTAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ATGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (32-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.661	100	0.769
pilU	Pseudomonas stutzeri DSM 10701	69.293	98.925	0.685
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.197	93.011	0.392