Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   I6L88_RS05910 Genome accession   NZ_CP077404
Coordinates   1215902..1216840 (-) Length   312 a.a.
NCBI ID   WP_002261897.1    Uniprot ID   Q8DV62
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1210902..1221840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS05890 (I6L88_05890) prsA 1211431..1212432 (-) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  I6L88_RS05895 (I6L88_05895) - 1212494..1213201 (-) 708 WP_002280249.1 O-methyltransferase -
  I6L88_RS05900 (I6L88_05900) - 1213251..1213868 (-) 618 WP_002261895.1 HAD-IA family hydrolase -
  I6L88_RS05905 (I6L88_05905) pepF 1214081..1215880 (-) 1800 WP_002261896.1 oligoendopeptidase F Regulator
  I6L88_RS05910 (I6L88_05910) coiA 1215902..1216840 (-) 939 WP_002261897.1 competence protein CoiA Machinery gene
  I6L88_RS05915 (I6L88_05915) - 1217148..1218041 (-) 894 WP_002261898.1 alpha/beta hydrolase -
  I6L88_RS05920 (I6L88_05920) - 1218147..1218428 (-) 282 WP_002269717.1 hypothetical protein -
  I6L88_RS05925 (I6L88_05925) - 1218513..1218640 (+) 128 Protein_1169 ArsR/SmtB family transcription factor -
  I6L88_RS05930 (I6L88_05930) - 1218673..1219641 (-) 969 WP_002261900.1 alcohol dehydrogenase catalytic domain-containing protein -
  I6L88_RS05935 (I6L88_05935) - 1219769..1221142 (+) 1374 WP_002261901.1 PLP-dependent aminotransferase family protein -
  I6L88_RS05940 (I6L88_05940) - 1221232..1221732 (-) 501 WP_002261902.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36721.05 Da        Isoelectric Point: 8.7637

>NTDB_id=506217 I6L88_RS05910 WP_002261897.1 1215902..1216840(-) (coiA) [Streptococcus mutans strain FDAARGOS 1458]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSNLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=506217 I6L88_RS05910 WP_002261897.1 1215902..1216840(-) (coiA) [Streptococcus mutans strain FDAARGOS 1458]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCACCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAACTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DV62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41