Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GOY40_RS15760 Genome accession   NZ_CP065034
Coordinates   3187811..3188407 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 2016-1400     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182811..3193407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY40_RS15745 (GOY40_015745) helD 3183019..3185073 (-) 2055 WP_031590196.1 DNA helicase IV -
  GOY40_RS15750 (GOY40_015750) - 3185198..3185644 (+) 447 WP_002898425.1 YccF domain-containing protein -
  GOY40_RS15755 (GOY40_015755) yccS 3185662..3187797 (+) 2136 WP_002898422.1 YccS family putative transporter -
  GOY40_RS15760 (GOY40_015760) sxy/tfoX 3187811..3188407 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  GOY40_RS15765 (GOY40_015765) sulA 3188756..3189265 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  GOY40_RS15770 (GOY40_015770) ompA 3189618..3190688 (+) 1071 WP_002898408.1 porin OmpA -
  GOY40_RS15775 (GOY40_015775) matP 3190820..3191272 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GOY40_RS15780 (GOY40_015780) - 3191458..3193215 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=506003 GOY40_RS15760 WP_004179217.1 3187811..3188407(-) (sxy/tfoX) [Klebsiella pneumoniae strain 2016-1400]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=506003 GOY40_RS15760 WP_004179217.1 3187811..3188407(-) (sxy/tfoX) [Klebsiella pneumoniae strain 2016-1400]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51