Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F131LOC_RS17450 Genome accession   NZ_CP065030
Coordinates   3909779..3910321 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium versatile strain F131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3904779..3915321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F131LOC_RS17435 (F131LOC_017435) cas6f 3904788..3905342 (+) 555 WP_103972279.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  F131LOC_RS17440 (F131LOC_017440) - 3906259..3906678 (-) 420 WP_103972280.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  F131LOC_RS17445 (F131LOC_017445) uvrA 3906694..3909528 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  F131LOC_RS17450 (F131LOC_017450) ssb 3909779..3910321 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  F131LOC_RS17455 (F131LOC_017455) - 3910964..3911245 (+) 282 WP_103861804.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=505935 F131LOC_RS17450 WP_039283288.1 3909779..3910321(+) (ssb) [Pectobacterium versatile strain F131]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=505935 F131LOC_RS17450 WP_039283288.1 3909779..3910321(+) (ssb) [Pectobacterium versatile strain F131]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAATCTCAGCAGCGTCCGGCACAG
AACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461