Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DKB71_RS30015 Genome accession   NZ_CP064949
Coordinates   6582485..6583006 (-) Length   173 a.a.
NCBI ID   WP_020799826.1    Uniprot ID   S2ERM9
Organism   Pseudomonas sp. PLMAX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6577485..6588006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS29990 (DKB71_29650) - 6577553..6578539 (+) 987 WP_323628305.1 lysylphosphatidylglycerol synthase domain-containing protein -
  DKB71_RS29995 (DKB71_29655) - 6578578..6579336 (-) 759 WP_274074396.1 S9 family peptidase -
  DKB71_RS30000 (DKB71_29660) - 6579326..6580435 (-) 1110 WP_408599131.1 DUF3182 family protein -
  DKB71_RS30005 (DKB71_29665) - 6580737..6581729 (-) 993 WP_274074394.1 GlxA family transcriptional regulator -
  DKB71_RS30010 (DKB71_29670) - 6581832..6582380 (+) 549 WP_274074393.1 cysteine hydrolase family protein -
  DKB71_RS30015 (DKB71_29675) ssb 6582485..6583006 (-) 522 WP_020799826.1 single-stranded DNA-binding protein Machinery gene
  DKB71_RS30020 (DKB71_29680) - 6583016..6584413 (-) 1398 WP_323607759.1 MFS transporter -
  DKB71_RS30025 (DKB71_29685) uvrA 6584605..6587439 (+) 2835 WP_323607757.1 excinuclease ABC subunit UvrA -
  DKB71_RS30030 (DKB71_29690) bfr 6587505..6587969 (-) 465 WP_008053867.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19188.30 Da        Isoelectric Point: 5.9314

>NTDB_id=505770 DKB71_RS30015 WP_020799826.1 6582485..6583006(-) (ssb) [Pseudomonas sp. PLMAX]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGQGGGNNYQQSAPRQQAPRPQQSAPQQSRPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=505770 DKB71_RS30015 WP_020799826.1 6582485..6583006(-) (ssb) [Pseudomonas sp. PLMAX]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCACAGCAGGGTGACCAGCAAGGCCAGGGCGGTGGTAACAACTACCAGCAATCCGCGC
CACGCCAGCAGGCTCCGCGTCCACAGCAGTCGGCCCCGCAACAGTCGCGCCCGGCTCCTCAGCAGGCGGCTCCGCAGCCG
GCTCCGGACTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S2ERM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.667

100

0.59
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.52
  ssb Neisseria meningitidis MC58

47.753

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.491