Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DKB71_RS28960 Genome accession   NZ_CP064949
Coordinates   6361089..6362420 (+) Length   443 a.a.
NCBI ID   WP_408598934.1    Uniprot ID   -
Organism   Pseudomonas sp. PLMAX     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6356089..6367420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS28935 (DKB71_28600) pgeF 6356279..6357004 (-) 726 WP_408598929.1 peptidoglycan editing factor PgeF -
  DKB71_RS28940 (DKB71_28605) rluD 6357001..6357963 (-) 963 WP_274074551.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DKB71_RS28945 (DKB71_28610) - 6358115..6359137 (+) 1023 WP_408598932.1 outer membrane protein assembly factor BamD -
  DKB71_RS28950 (DKB71_28615) - 6359274..6359507 (+) 234 WP_274074549.1 PP0621 family protein -
  DKB71_RS28955 (DKB71_28620) pilS 6359497..6361086 (+) 1590 WP_408601172.1 sensor histidine kinase Regulator
  DKB71_RS28960 (DKB71_28625) pilR 6361089..6362420 (+) 1332 WP_408598934.1 sigma-54-dependent transcriptional regulator Regulator
  DKB71_RS28965 (DKB71_28630) thiO 6362541..6363641 (-) 1101 WP_323608772.1 glycine oxidase ThiO -
  DKB71_RS28970 (DKB71_28635) - 6363696..6364097 (-) 402 WP_274074545.1 type IV pilin protein -
  DKB71_RS28975 (DKB71_28640) - 6364112..6365941 (-) 1830 Protein_5709 pilus assembly protein -
  DKB71_RS28980 (DKB71_28645) - 6366039..6366509 (-) 471 WP_408598937.1 PilX N-terminal domain-containing pilus assembly protein -
  DKB71_RS28985 (DKB71_28650) - 6366521..6367234 (-) 714 WP_408598939.1 PilW family protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49410.74 Da        Isoelectric Point: 6.3260

>NTDB_id=505768 DKB71_RS28960 WP_408598934.1 6361089..6362420(+) (pilR) [Pseudomonas sp. PLMAX]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTYSARNAGEALILLQREAFDLCLTDMRLPDGSGLELVQHIQQRYPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVTSALLLPAPGSAIDRRLLGDSPPMRDLRKQIDKLARSQAPVYIS
GESGSGKERVARLIHERGPRASQPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEVVVDVRILCATHKDLGAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASHVLK
RLAADTGQPAATLHPNALEVLKSYRFPGNVRELENMLERAHTLCDNQQIEPSDLRLAEGNCAAEAGVPDLTQIDNLEAYL
ENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=505768 DKB71_RS28960 WP_408598934.1 6361089..6362420(+) (pilR) [Pseudomonas sp. PLMAX]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGACATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAGCTCGATACCTACAGCGCACGCAACGCTGGCGAGGCCTTGATACTGCTCCAGCGCGAGGCGTTCGACCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAGCGGCCTGGAGCTGGTGCAACACATCCAGCAACGCTACCCGCAAGTCCCGGTGGCC
ATGATCACGGCCTATGGCAGCCTCGACACGGCGATCAATGCACTGAAGGCCGGTGCGTTCGATTTCCTGACCAAACCGGT
GGACCTGACCCGCCTTCGGGAACTGGTGACCAGTGCCTTGCTGCTGCCCGCCCCTGGCTCCGCCATCGATCGTCGTTTGC
TGGGCGACTCACCGCCCATGCGCGATCTGCGCAAACAGATCGACAAACTGGCCCGTAGCCAGGCACCGGTGTACATCAGT
GGCGAGTCCGGCAGCGGCAAGGAACGGGTCGCCCGCCTGATTCATGAGCGAGGACCACGGGCCAGCCAACCCTTTGTCCC
GGTCAATTGCGGTGCGATTCCGACCGAGCTGATGGAGAGCGAGTTTTTCGGCCATCGAAAAGGCAGCTTCAGCGGCGCCA
TCGAAGATAAACCGGGACTGTTCCAGGCGGCCCACGGCGGCACCCTGTTCCTCGACGAAGTGGCAGACCTGCCTTTGCCG
ATGCAGGTCAAACTGTTGCGGGCCATCCAGGAGAAAGCAGTACGCAGCGTCGGTGGGCAACAGGAAGTGGTGGTCGATGT
GCGCATCCTTTGCGCCACCCACAAAGACCTGGGCGCCGAAGTCGCTGCCGAACGTTTTCGCCAGGACCTGTACTACCGCC
TGAACGTGATCGAGCTGCGGGTTCCGCCCTTGCGCGAACGCCGTGACGACATCGAGCCCCTGGCCAGCCATGTGCTCAAG
CGCCTGGCTGCAGACACCGGGCAGCCCGCGGCAACACTCCACCCGAATGCCCTCGAGGTCCTGAAAAGCTACCGTTTCCC
TGGCAATGTGCGCGAACTTGAGAACATGCTCGAACGGGCTCACACGTTATGCGACAACCAGCAGATCGAGCCCAGCGACC
TGCGCCTGGCCGAAGGCAACTGTGCCGCCGAAGCGGGTGTGCCGGACCTTACGCAGATCGATAACCTGGAAGCGTACCTG
GAAAACGTTGAGCGCCAGTTGCTTTTGCAGGCGCTGGAAGAGACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTGTCATTCAGATCGATGCGCTACAGGCTGAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

100

0.797
  pilR Acinetobacter baumannii strain A118

49.891

100

0.517
  luxO Vibrio cholerae strain A1552

36.199

99.774

0.361