Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DKB71_RS28955 Genome accession   NZ_CP064949
Coordinates   6359497..6361086 (+) Length   529 a.a.
NCBI ID   WP_408601172.1    Uniprot ID   -
Organism   Pseudomonas sp. PLMAX     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6354497..6366086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS28935 (DKB71_28600) pgeF 6356279..6357004 (-) 726 WP_408598929.1 peptidoglycan editing factor PgeF -
  DKB71_RS28940 (DKB71_28605) rluD 6357001..6357963 (-) 963 WP_274074551.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DKB71_RS28945 (DKB71_28610) - 6358115..6359137 (+) 1023 WP_408598932.1 outer membrane protein assembly factor BamD -
  DKB71_RS28950 (DKB71_28615) - 6359274..6359507 (+) 234 WP_274074549.1 PP0621 family protein -
  DKB71_RS28955 (DKB71_28620) pilS 6359497..6361086 (+) 1590 WP_408601172.1 sensor histidine kinase Regulator
  DKB71_RS28960 (DKB71_28625) pilR 6361089..6362420 (+) 1332 WP_408598934.1 sigma-54-dependent transcriptional regulator Regulator
  DKB71_RS28965 (DKB71_28630) thiO 6362541..6363641 (-) 1101 WP_323608772.1 glycine oxidase ThiO -
  DKB71_RS28970 (DKB71_28635) - 6363696..6364097 (-) 402 WP_274074545.1 type IV pilin protein -
  DKB71_RS28975 (DKB71_28640) - 6364112..6365941 (-) 1830 Protein_5709 pilus assembly protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58649.70 Da        Isoelectric Point: 6.9565

>NTDB_id=505767 DKB71_RS28955 WP_408601172.1 6359497..6361086(+) (pilS) [Pseudomonas sp. PLMAX]
MIAETTSPGDKQAQRLLRLYHLYRLSIGITLVLLISSNLDYRLLTSANDDLLRYASGLYLVLNILLVVFFANTRRPTQLL
SLALVDVLLLCVLFYAGGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAISALGILGSSFLLNLSHPASPNDYLQIGTLG
ALCFAASLLVQGLVRRLEVSETLAEQKTSEVIGLEALNALILQRMRTGILVFDDQWRVQLANHSALALLGCERLEGRRID
EQAPALVERLQLWINNPTLRPQSLKIPGSGLELQPSFIALAPGPHQQILVFLEDLAQVTQQAQQLKLAALGRLTAGVAHE
IRNPLGAISHAAQLLRESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVAQRLDLKPWLEQFVTQTREQATER
QKIHLRMACGDFSTLMDPNQLEQILDNLIRNAWRHSALNHDQAQVWLEFFIDPESQLPILEVLDDGPGVAPDHQAQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGCKQG

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=505767 DKB71_RS28955 WP_408601172.1 6359497..6361086(+) (pilS) [Pseudomonas sp. PLMAX]
GTGATCGCTGAGACGACCAGTCCCGGCGACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATTTCCAGCAACCTGGACTACCGGTTGCTGACGTCCGCCAATGACGACCTGCTGCGCT
ACGCCAGCGGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTCTTCTTCGCAAACACCCGCCGTCCGACACAACTGCTC
AGCCTGGCGCTGGTCGATGTCCTGCTGCTTTGCGTGTTGTTCTACGCCGGTGGCGGTGTGGCCAGCGCCATTGGCAACTT
GTTGATCGTCTCGGTGGCCATCAGCAATACCTTGTTGCGAGGACGCATCGGCCTGCTGATTGCCGCCATCAGCGCACTTG
GCATCCTGGGTTCGAGTTTCCTGCTGAATCTCAGCCATCCCGCCAGCCCCAACGATTACTTGCAGATCGGCACGCTCGGC
GCCCTGTGTTTTGCCGCGTCACTGCTGGTGCAAGGCCTGGTCCGACGACTGGAAGTCAGCGAAACCCTGGCAGAACAGAA
AACCAGCGAAGTCATCGGCCTGGAAGCCCTCAATGCCCTGATCCTGCAACGCATGCGTACTGGCATTCTGGTGTTTGACG
ACCAATGGCGCGTGCAACTGGCCAATCACAGTGCGTTGGCCCTGCTGGGCTGCGAGCGCCTCGAAGGCCGGCGGATCGAC
GAACAGGCCCCCGCCCTGGTCGAACGTCTGCAACTGTGGATCAACAACCCGACGCTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAGCGGCCTTGAACTGCAGCCGAGCTTCATTGCCCTGGCTCCTGGCCCGCATCAGCAGATCCTGGTCTTTCTCGAAG
ACCTCGCCCAGGTCACCCAGCAGGCTCAACAACTGAAACTCGCCGCCCTCGGCCGCCTGACCGCCGGTGTCGCCCATGAA
ATCCGCAATCCGTTAGGCGCCATCAGTCACGCCGCGCAGCTATTGCGCGAATCGGAGGAACTGAATGGCGCGGATCGACG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCGTGGCGCAACGACTCGACTTGAAGCCGTGGCTGGAGCAGTTCGTCACACAAACCCGCGAGCAGGCGACCGAGCGC
CAGAAGATCCATCTACGCATGGCTTGCGGTGACTTCAGTACCTTGATGGACCCGAACCAGCTGGAGCAGATTCTCGACAA
CCTGATCCGCAATGCATGGCGCCATAGCGCCCTGAACCACGACCAGGCGCAGGTCTGGCTTGAGTTTTTCATCGACCCCG
AGAGTCAGCTGCCGATCCTCGAAGTCCTCGACGACGGCCCCGGGGTGGCCCCGGACCATCAAGCGCAATTGTTCGAGCCT
TTCTTCACCACCAGCCACCAGGGCACGGGCCTGGGCCTTTATCTGTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCCT
GGACTTCAAATCACGCCAGGGCGGCGGCTGCTTTCGCATTACCTTTGCTCACGGATGCAAACAAGGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.144

99.811

0.58