Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IV493_RS16545 Genome accession   NZ_CP064872
Coordinates   3561009..3561566 (-) Length   185 a.a.
NCBI ID   WP_033734905.1    Uniprot ID   A0AAN1TUF4
Organism   Pantoea sp. SM3640     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3556009..3566566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV493_RS16525 (IV493_16525) - 3557115..3557510 (+) 396 WP_013359793.1 transposase -
  IV493_RS16530 (IV493_16530) - 3558434..3559393 (-) 960 WP_013359792.1 DMT family transporter -
  IV493_RS16535 (IV493_16535) - 3559471..3560298 (-) 828 WP_033734909.1 AraC family transcriptional regulator -
  IV493_RS16540 (IV493_16540) - 3560418..3560939 (+) 522 WP_013359790.1 isochorismatase family protein -
  IV493_RS16545 (IV493_16545) ssb 3561009..3561566 (-) 558 WP_033734905.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IV493_RS16550 (IV493_16550) uvrA 3561791..3564619 (+) 2829 WP_033784472.1 excinuclease ABC subunit UvrA -
  IV493_RS16555 (IV493_16555) - 3564852..3565916 (+) 1065 WP_013359787.1 NAD(P)-dependent alcohol dehydrogenase -
  IV493_RS16560 (IV493_16560) - 3565969..3566292 (-) 324 WP_013359786.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19811.71 Da        Isoelectric Point: 5.2456

>NTDB_id=505513 IV493_RS16545 WP_033734905.1 3561009..3561566(-) (ssb) [Pantoea sp. SM3640]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQSRP
QQQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=505513 IV493_RS16545 WP_033734905.1 3561009..3561566(-) (ssb) [Pantoea sp. SM3640]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCGGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCAGGCGAATACCTGAAAAAAGGATCGCAGGTTTACATC
GAAGGTCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGCAACGCGGGTGCACCAGCAGGTGGTGGCGCGCAGGGCGGTG
GCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAACAACCAGTTCAGTGGCGGCGCGCAGTCCCGTCCG
CAGCAGCAGCCACAGAGCGCACCGGCCAGCAACAACAACGAACCTCCAATGGATTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.681

100

0.708
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.584
  ssb Neisseria meningitidis MC58

46.032

100

0.47
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.47