Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KQ254_RS04340 Genome accession   NZ_CP076807
Coordinates   919919..920461 (+) Length   180 a.a.
NCBI ID   WP_106439673.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 914919..925461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04320 (KQ254_04300) - 916313..917200 (+) 888 WP_212287776.1 metal-dependent hydrolase -
  KQ254_RS04325 (KQ254_04305) - 917331..917921 (+) 591 WP_000846931.1 LemA family protein -
  KQ254_RS04330 (KQ254_04310) - 917943..919022 (+) 1080 WP_133224081.1 TPM domain-containing protein -
  KQ254_RS04335 (KQ254_04315) - 919016..919576 (+) 561 WP_106439674.1 TPM domain-containing protein -
  KQ254_RS04340 (KQ254_04320) pilE 919919..920461 (+) 543 WP_106439673.1 pilin Machinery gene
  KQ254_RS04345 (KQ254_04325) tfpZ 920533..921267 (+) 735 WP_106439672.1 TfpX/TfpZ family type IV pilin accessory protein -
  KQ254_RS04350 (KQ254_04330) - 921367..922995 (+) 1629 WP_106439671.1 O-antigen ligase family protein -
  KQ254_RS04355 (KQ254_04335) bfr 923037..923501 (-) 465 WP_057074886.1 bacterioferritin -
  KQ254_RS04360 (KQ254_04340) - 923746..923940 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  KQ254_RS04365 (KQ254_04345) - 924150..924533 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18109.35 Da        Isoelectric Point: 5.0038

>NTDB_id=504903 KQ254_RS04340 WP_106439673.1 919919..920461(+) (pilE) [Acinetobacter baumannii strain UC20804]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYSDYTVRTRVTEGLNLADSAKQMIASDGSASVADLANVATTWNAQAANTGA
NSKYVNSVQIDGTTGEITVVYNATAVGVAANANTIHIKPYVRSAAAGTAQTLDAALTAGATGSIDWGCASNTHASATTAG
LDTALTAGTLEAKFAPASCR

Nucleotide


Download         Length: 543 bp        

>NTDB_id=504903 KQ254_RS04340 WP_106439673.1 919919..920461(+) (pilE) [Acinetobacter baumannii strain UC20804]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCGATTGCGAT
CCCTGCTTATTCAGATTATACCGTGCGTACTCGTGTAACTGAGGGATTAAATTTAGCAGATAGTGCAAAACAAATGATTG
CATCGGATGGTAGTGCTTCAGTTGCTGATTTAGCAAATGTTGCTACTACTTGGAATGCCCAAGCAGCCAATACCGGTGCA
AATTCTAAATATGTTAATTCAGTACAGATTGATGGGACTACTGGTGAGATTACTGTAGTCTATAATGCAACAGCTGTTGG
CGTTGCAGCAAATGCAAATACAATTCATATTAAACCTTATGTTCGTTCAGCTGCAGCTGGTACAGCTCAAACTTTAGATG
CTGCATTAACTGCTGGAGCAACTGGTTCAATTGACTGGGGTTGTGCATCAAATACTCATGCTTCGGCTACTACGGCAGGT
TTGGACACTGCTTTAACGGCTGGTACATTAGAGGCGAAATTTGCTCCTGCTTCATGTCGTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

40.609

100

0.444
  pilA Ralstonia pseudosolanacearum GMI1000

43.407

100

0.439
  pilA2 Legionella pneumophila strain ERS1305867

44.633

98.333

0.439
  pilA2 Legionella pneumophila str. Paris

44.633

98.333

0.439