Detailed information NTG0504838

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: IZG20_RS13715
• Genome accession: NZ_CP064794
• Coordinates: 3015730..3017463 (-)
• Length: 577 a.a.
• NCBI ID: WP_014504319.1
• Uniprot ID: G7TE85
• Organism: Xanthomonas oryzae pv. oryzicola strain HGA4
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3010730..3022463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IZG20_RS13695	-	3011545..3013158 (+)	1614	WP_014504316.1	HAMP domain-containing sensor histidine kinase	-
IZG20_RS13700	pilR	3013429..3014880 (+)	1452	WP_178385942.1	sigma-54 dependent transcriptional regulator	Regulator
IZG20_RS13705	-	3014953..3015159 (+)	207	WP_076342549.1	YhfG family protein	-
IZG20_RS13710	-	3015221..3015721 (+)	501	WP_082350409.1	Fic family protein	-
IZG20_RS13715	pilB	3015730..3017463 (-)	1734	WP_014504319.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IZG20_RS13720	-	3017498..3019024 (-)	1527	WP_048483580.1	membrane protein	-
IZG20_RS13725	-	3018994..3019623 (-)	630	WP_229690097.1	hypothetical protein	-
IZG20_RS13730	-	3019634..3021223 (-)	1590	WP_014504322.1	phosphoethanolamine transferase	-
IZG20_RS13735	pilA2	3021359..3021784 (-)	426	WP_047340102.1	pilin	Machinery gene

Sequence

Protein

• Length: 577 a.a.
• Molecular weight: 62954.05 Da
• Isoelectric Point: 5.6097

>NTDB_id=504838 IZG20_RS13715 WP_014504319.1 3015730..3017463(-) (pilB) [Xanthomonas oryzae pv. oryzicola strain HGA4]
MNSVSTTNLVGITGIARRLVQDGALEEAAARTAMEQAAAAKVPLPQWFAEKRLVSASQLAAANAVEFGMPLMDVSVFDAN
QNAVKLVSEELLQKYHVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASFGSSLG
NDDEEMGDLDVSTGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
EHALLAEGFTPEQVANMELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMK
ASQGVTSLAEINRVTKD

Nucleotide

• Length: 1734 bp

>NTDB_id=504838 IZG20_RS13715 WP_014504319.1 3015730..3017463(-) (pilB) [Xanthomonas oryzae pv. oryzicola strain HGA4]
ATGAATTCAGTATCTACAACCAACCTCGTTGGCATCACCGGCATCGCTCGTCGCCTTGTGCAGGATGGCGCCCTGGAGGA
AGCCGCTGCGCGGACAGCGATGGAACAGGCGGCCGCTGCCAAGGTGCCGCTGCCGCAGTGGTTTGCCGAGAAGAGGCTGG
TGTCGGCGTCGCAGCTGGCGGCGGCCAATGCAGTGGAATTTGGCATGCCACTGATGGATGTGTCTGTGTTCGACGCTAAC
CAGAACGCAGTCAAGCTAGTCAGCGAGGAGTTGCTCCAGAAGTACCATGTGCTGCCTCTGTTCAAGCGCGGCAATCGGTT
GTTTGTGGGAGTGAGCAACCCGACCCAGACCCGTGCACTAGATGACATCAAGTTTCATACGAATCTGGTCGTCGAGCCGA
TTCTTGTCGATGAGGACCAAATTCGTCGCACATTGGAGCAGTGGCAGGCAAGCAATGCCTCATTTGGATCATCGCTTGGC
AACGACGACGAGGAAATGGGGGATCTGGACGTCTCCACCGGCGACGAAGACATGGGCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTTGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGGGCCTCGGACA
TCCATTTCGAGCCGTACGAAGACGACTACCGGGTGCGGTTGCGGATCGACGGGTTGCTGAAGAACGTGGCCAAGGCGCCG
GTGAAGCTGAGCCAGCGCATCGCGGCGCGTTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAA
AGGTGGTGCTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTACGAGCCGGACCAACAGAAG
CTGTTCCTGGAAGCGATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGCT
GTACACGGCGCTGGGCATCCTCAACGATGAGACGCGCAACATCTCCACCGCCGAGGATCCGGTCGAAATTCGCCTGCCTG
GCGTCAACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGTTCGTTCCTGCGACAGGATCCG
GATATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATCGCGATCAAGGCGGCGCAGACCGGTCACATGGT
GCTGTCCACGCTGCATACCAACGATGCGCCACAGACCATCGCGCGTCTGATGAACATGGGCATCGCGCCCTACAACATCA
CCTCGTCGGTGACCTTGGTCATCGCGCAGCGTCTGGCGCGGCGGTTGTGCAATAACTGCAAGCGCAAGTCGACGTTGCCG
GAGCATGCACTGCTGGCGGAAGGCTTTACGCCGGAGCAGGTCGCGAATATGGAGCTTTATGAAGCCGTGGGTTGCGACGA
GTGCACCGAGGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGCTGG
AAGGCGGCAATGCGATGCAGATTGCCGAGGCCGCTCAGAAGATCGGCATCCGGGACTTGCGGCAGTCGGCGTTGATGAAG
GCCTCGCAAGGCGTGACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (201-468)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-152)

3D structure

• AlphaFold DB: G7TE85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	56.866	98.44	0.56
pilB	Acinetobacter baylyi ADP1	56.866	98.44	0.56
pilB	Legionella pneumophila strain ERS1305867	52.113	98.44	0.513
pilB	Vibrio cholerae strain A1552	50.087	100	0.501
pilF	Neisseria gonorrhoeae MS11	49.648	98.44	0.489
pilB	Vibrio campbellii strain DS40M4	45.913	99.653	0.458
pilB	Vibrio parahaemolyticus RIMD 2210633	46.359	97.574	0.452
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.394	91.508	0.36