Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ220_RS22145 Genome accession   NZ_CP076709
Coordinates   4625029..4625565 (+) Length   178 a.a.
NCBI ID   WP_112004705.1    Uniprot ID   -
Organism   Escherichia coli O158:H23 strain CFIAFB20140388     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4620029..4630565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ220_RS22125 (KQ220_22120) aphA 4620316..4621029 (+) 714 WP_001226928.1 acid phosphatase AphA -
  KQ220_RS22130 (KQ220_22125) yjbQ 4621140..4621556 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KQ220_RS22135 (KQ220_22130) yjbR 4621560..4621916 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KQ220_RS22140 (KQ220_22135) uvrA 4621951..4624773 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  KQ220_RS22145 (KQ220_22140) ssb 4625029..4625565 (+) 537 WP_112004705.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KQ220_RS22150 (KQ220_22145) yjcB 4625664..4625945 (-) 282 WP_001295689.1 YjcB family protein -
  KQ220_RS22155 (KQ220_22150) pdeC 4626375..4627961 (+) 1587 WP_216781277.1 c-di-GMP phosphodiesterase PdeC -
  KQ220_RS22160 (KQ220_22155) soxS 4627964..4628287 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KQ220_RS22165 (KQ220_22160) soxR 4628373..4628837 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19033.03 Da        Isoelectric Point: 4.9468

>NTDB_id=504352 KQ220_RS22145 WP_112004705.1 4625029..4625565(+) (ssb) [Escherichia coli O158:H23 strain CFIAFB20140388]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGDQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=504352 KQ220_RS22145 WP_112004705.1 4625029..4625565(+) (ssb) [Escherichia coli O158:H23 strain CFIAFB20140388]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGACCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.601
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483