Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ217_RS14965 Genome accession   NZ_CP076706
Coordinates   3097413..3097949 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3092413..3102949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS14945 (KQ217_14945) aphA 3092701..3093414 (+) 714 WP_001226933.1 acid phosphatase AphA -
  KQ217_RS14950 (KQ217_14950) yjbQ 3093525..3093941 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KQ217_RS14955 (KQ217_14955) yjbR 3093945..3094301 (+) 357 WP_000155672.1 MmcQ/YjbR family DNA-binding protein -
  KQ217_RS14960 (KQ217_14960) uvrA 3094336..3097158 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  KQ217_RS14965 (KQ217_14965) ssb 3097413..3097949 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KQ217_RS14970 (KQ217_14970) yjcB 3098048..3098329 (-) 282 WP_105471739.1 YjcB family protein -
  KQ217_RS14975 (KQ217_14975) pdeC 3098758..3100311 (+) 1554 WP_001490707.1 c-di-GMP phosphodiesterase PdeC -
  KQ217_RS14980 (KQ217_14980) soxS 3100347..3100670 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KQ217_RS14985 (KQ217_14985) soxR 3100756..3101220 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=504252 KQ217_RS14965 WP_000168305.1 3097413..3097949(+) (ssb) [Escherichia coli O170:H18 strain CFIAFB20120266]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=504252 KQ217_RS14965 WP_000168305.1 3097413..3097949(+) (ssb) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489