Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S70_RS16360 Genome accession   NC_017731
Coordinates   3539797..3540345 (-) Length   182 a.a.
NCBI ID   WP_014657854.1    Uniprot ID   A0A140NQK5
Organism   Providencia stuartii MRSN 2154     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3534846..3547538 3539797..3540345 within 0


Gene organization within MGE regions


Location: 3534846..3547538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S70_RS23080 (S70_16650) - 3534846..3535892 (-) 1047 WP_014657844.1 tyrosine-type recombinase/integrase -
  S70_RS23085 (S70_16655) - 3536094..3536318 (-) 225 WP_041705223.1 hypothetical protein -
  S70_RS16315 - 3536311..3536505 (-) 195 WP_041705225.1 hypothetical protein -
  S70_RS16320 (S70_16660) - 3536513..3537145 (-) 633 WP_014657846.1 MT-A70 family methyltransferase -
  S70_RS16325 (S70_16665) - 3537132..3537443 (-) 312 WP_014657847.1 phage protein NinX family protein -
  S70_RS16330 (S70_16670) - 3537603..3537812 (-) 210 WP_014657848.1 hypothetical protein -
  S70_RS16335 (S70_16675) - 3537964..3538230 (-) 267 WP_014657849.1 hypothetical protein -
  S70_RS16340 (S70_16680) - 3538238..3538561 (-) 324 WP_014657850.1 hypothetical protein -
  S70_RS16345 (S70_16685) - 3538630..3538881 (-) 252 WP_014657851.1 hypothetical protein -
  S70_RS16350 (S70_16690) - 3538925..3539428 (-) 504 WP_014657852.1 ASCH domain-containing protein -
  S70_RS16360 (S70_16700) ssb 3539797..3540345 (-) 549 WP_014657854.1 single-stranded DNA-binding protein Machinery gene
  S70_RS16365 (S70_16705) - 3540346..3541218 (-) 873 WP_014657855.1 ATP-binding protein -
  S70_RS16370 (S70_16710) - 3541233..3541445 (-) 213 WP_014657856.1 hypothetical protein -
  S70_RS23090 (S70_16715) - 3541684..3541956 (-) 273 WP_014657857.1 hypothetical protein -
  S70_RS16380 (S70_16720) - 3542185..3542484 (-) 300 WP_014657858.1 hypothetical protein -
  S70_RS16385 (S70_16725) - 3542474..3542725 (-) 252 WP_014657859.1 hypothetical protein -
  S70_RS16390 (S70_16730) - 3542743..3542931 (-) 189 WP_014657860.1 hypothetical protein -
  S70_RS16395 (S70_16735) - 3542959..3543198 (-) 240 WP_014657861.1 hypothetical protein -
  S70_RS16400 (S70_16740) - 3543460..3543762 (-) 303 WP_014657862.1 hypothetical protein -
  S70_RS16405 (S70_16745) - 3543765..3544040 (-) 276 WP_014657863.1 hypothetical protein -
  S70_RS21565 (S70_16755) - 3544845..3545861 (-) 1017 WP_014657865.1 hypothetical protein -
  S70_RS23095 (S70_16760) - 3545944..3546231 (-) 288 WP_223854688.1 DUF3024 domain-containing protein -
  S70_RS23100 - 3546307..3546441 (-) 135 WP_255531743.1 hypothetical protein -
  S70_RS16425 (S70_16765) - 3546562..3547209 (-) 648 WP_014657866.1 LexA family protein -
  S70_RS16430 (S70_16770) - 3547329..3547538 (+) 210 WP_014657867.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20090.34 Da        Isoelectric Point: 7.2005

>NTDB_id=50419 S70_RS16360 WP_014657854.1 3539797..3540345(-) (ssb) [Providencia stuartii MRSN 2154]
MAERGVNKSIILGSLGDDPIVRYSPNGTAFANFSVATSETWKDKNTGEKRERTDWHNIVIQGKLAEVAGQYLKKGSQVYI
EGKMRTRKYQGNDGQDKYITEVIVGIDGKMQMLGGRGGESSGQSQGGQSGWGQPQQPARQPQQPQQAQPADWSKQNPDGE
WEDDIPFAPIGLPYPRHAIYVI

Nucleotide


Download         Length: 549 bp        

>NTDB_id=50419 S70_RS16360 WP_014657854.1 3539797..3540345(-) (ssb) [Providencia stuartii MRSN 2154]
ATGGCTGAAAGAGGCGTCAATAAATCCATCATTCTAGGAAGTTTAGGCGATGATCCGATCGTGAGGTATTCACCAAACGG
AACCGCATTTGCTAATTTTTCGGTTGCTACAAGCGAAACGTGGAAAGATAAAAACACAGGTGAGAAACGAGAGCGCACTG
ATTGGCACAACATTGTCATACAAGGAAAGCTGGCAGAGGTGGCAGGCCAATACCTGAAAAAAGGCAGCCAGGTATACATT
GAAGGAAAAATGCGCACTCGTAAGTATCAAGGTAATGACGGGCAAGATAAATACATTACGGAAGTTATCGTTGGCATTGA
TGGGAAAATGCAAATGTTAGGCGGACGTGGTGGCGAATCATCAGGCCAAAGCCAAGGTGGTCAAAGCGGTTGGGGGCAGC
CTCAGCAACCAGCGCGACAGCCTCAGCAGCCACAGCAAGCGCAGCCCGCAGATTGGAGCAAGCAAAATCCAGACGGGGAA
TGGGAGGATGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NQK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

97.253

0.549
  ssb Glaesserella parasuis strain SC1401

46.739

100

0.473
  ssb Neisseria gonorrhoeae MS11

47.458

97.253

0.462
  ssb Neisseria meningitidis MC58

47.977

95.055

0.456

Multiple sequence alignment