Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IVG45_RS10665 Genome accession   NZ_CP064653
Coordinates   2285950..2286408 (-) Length   152 a.a.
NCBI ID   WP_196437786.1    Uniprot ID   A0A7T0JRY1
Organism   Methylomonas sp. LL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2280950..2291408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVG45_RS22890 (IVG45_10625) - 2280986..2283337 (-) 2352 WP_196437782.1 nucleotide disphospho-sugar-binding domain-containing protein -
  IVG45_RS10645 (IVG45_10630) - 2283353..2283904 (-) 552 WP_196437783.1 hypothetical protein -
  IVG45_RS10650 (IVG45_10635) - 2283907..2284410 (-) 504 WP_230874834.1 GNAT family N-acetyltransferase -
  IVG45_RS10655 (IVG45_10640) - 2284518..2285153 (-) 636 WP_196437784.1 hypothetical protein -
  IVG45_RS10660 (IVG45_10645) - 2285322..2285813 (-) 492 WP_196437785.1 DUF4240 domain-containing protein -
  IVG45_RS10665 (IVG45_10650) ssb 2285950..2286408 (-) 459 WP_196437786.1 single-stranded DNA-binding protein Machinery gene
  IVG45_RS10670 (IVG45_10655) - 2286445..2287800 (-) 1356 WP_196437787.1 MFS transporter -
  IVG45_RS10675 (IVG45_10660) - 2287983..2288324 (+) 342 WP_196437788.1 coiled-coil domain-containing protein -
  IVG45_RS10680 (IVG45_10665) - 2288431..2288928 (+) 498 WP_196437789.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16903.79 Da        Isoelectric Point: 5.2852

>NTDB_id=504046 IVG45_RS10665 WP_196437786.1 2285950..2286408(-) (ssb) [Methylomonas sp. LL1]
MLNKVMLIGRLGADPEIRYMPSGDPIATLNLATSRRWKDRNSGERKEETEWHRVTFFGPVAKVCGEYLKKGSQVYVEGRI
KTDKYQKDGVDVYRTGIIGEQMNMLDSRSGGTANYSDNAPPASSYDNRPSGPATSSQPAPASYDDFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=504046 IVG45_RS10665 WP_196437786.1 2285950..2286408(-) (ssb) [Methylomonas sp. LL1]
ATGTTGAACAAAGTCATGCTGATCGGCCGTCTGGGCGCCGATCCGGAAATTCGCTACATGCCGAGCGGAGACCCCATCGC
AACGCTAAATCTCGCCACCAGTCGGCGCTGGAAAGACCGTAATTCCGGTGAGCGCAAGGAAGAAACCGAATGGCATCGGG
TGACGTTCTTTGGTCCGGTTGCCAAGGTATGCGGCGAATATTTGAAAAAAGGCAGCCAGGTCTATGTCGAAGGACGGATT
AAAACCGACAAATACCAAAAGGACGGGGTCGATGTATACCGTACCGGGATTATTGGTGAACAGATGAACATGCTGGACAG
TCGCAGCGGCGGCACCGCCAATTATTCCGACAACGCGCCTCCCGCCAGCAGCTACGACAATCGGCCATCCGGTCCGGCTA
CCAGCTCGCAACCAGCACCGGCCAGCTATGATGACTTTGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0JRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.328

100

0.539
  ssb Vibrio cholerae strain A1552

46.512

100

0.526
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.5
  ssb Neisseria meningitidis MC58

43.353

100

0.493