Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   KRG72_RS02405 Genome accession   NZ_CP076703
Coordinates   455310..455972 (+) Length   220 a.a.
NCBI ID   WP_258255722.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450310..460972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS02380 (KRG72_02380) - 450446..451846 (+) 1401 WP_081341909.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  KRG72_RS02385 (KRG72_02385) - 451846..452202 (+) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  KRG72_RS02390 (KRG72_02390) cysK 452302..453231 (-) 930 WP_074561282.1 cysteine synthase A -
  KRG72_RS02395 (KRG72_02395) - 453331..453957 (-) 627 WP_258255720.1 YigZ family protein -
  KRG72_RS02400 (KRG72_02400) comFA/cflA 454012..455310 (+) 1299 WP_258255721.1 DEAD/DEAH box helicase Machinery gene
  KRG72_RS02405 (KRG72_02405) comFC/cflB 455310..455972 (+) 663 WP_258255722.1 ComF family protein Machinery gene
  KRG72_RS02410 (KRG72_02410) hpf 456049..456597 (+) 549 WP_039695883.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25741.96 Da        Isoelectric Point: 9.3617

>NTDB_id=504037 KRG72_RS02405 WP_258255722.1 455310..455972(+) (comFC/cflB) [Streptococcus equinus strain S1]
MICLLCGQEFSEKETFLGIITMRKSRYLICKECQENFEKIGDDHCPTCYRKGSKEQCDDCKKWAKENHKVSHRALYTYNE
AMKEYFSKYKFQGDAMLSHVFAKEVKQVLKNYKGYTIIPVSLSKERMTERQFNQVTGILDAAKISYYDILEKKDIKKQSE
KSRKERLTSDCPFRIKSDIPIPDKVLIIDDIYTTGATLKGIYRLFYEKGVKIVKSLTIAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=504037 KRG72_RS02405 WP_258255722.1 455310..455972(+) (comFC/cflB) [Streptococcus equinus strain S1]
ATGATATGTTTGCTTTGCGGACAAGAATTTTCTGAGAAGGAAACTTTTCTAGGAATTATTACAATGCGCAAGAGCCGTTA
CTTGATTTGTAAGGAGTGTCAGGAAAACTTTGAAAAAATTGGTGATGACCACTGTCCAACGTGCTACCGAAAAGGCAGTA
AAGAGCAGTGTGATGATTGCAAGAAGTGGGCAAAAGAAAATCATAAAGTTTCGCACCGAGCACTGTATACTTACAATGAA
GCCATGAAAGAGTATTTTTCAAAATACAAATTTCAAGGAGATGCTATGCTAAGCCATGTTTTTGCAAAAGAAGTCAAACA
AGTCTTGAAGAACTACAAGGGCTATACCATTATTCCTGTCTCACTCAGCAAAGAACGAATGACAGAAAGACAATTCAATC
AAGTTACAGGCATTCTAGATGCTGCTAAGATTTCTTACTATGATATTTTAGAGAAGAAAGATATTAAAAAGCAATCTGAA
AAAAGTAGAAAAGAAAGACTGACAAGTGACTGTCCTTTTAGGATTAAATCAGATATTCCGATACCAGATAAAGTATTAAT
TATTGATGATATTTACACAACGGGAGCAACTTTAAAAGGAATTTATCGCTTATTTTATGAAAAAGGAGTAAAGATTGTAA
AAAGTTTAACAATTGCACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

45.455

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

45.455

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

45.455

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

45.455

100

0.455
  comFC/cflB Streptococcus mitis NCTC 12261

45

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.545

100

0.445