Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KPA27_RS00350 Genome accession   NZ_CP076517
Coordinates   62710..63300 (+) Length   196 a.a.
NCBI ID   WP_074391042.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57710..68300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS00340 (KPA27_00340) - 59092..60615 (+) 1524 WP_141587958.1 quinol oxidase -
  KPA27_RS00345 (KPA27_00345) hexB 60734..62671 (+) 1938 WP_141587959.1 DNA mismatch repair endonuclease MutL Machinery gene
  KPA27_RS00350 (KPA27_00350) ruvA 62710..63300 (+) 591 WP_074391042.1 Holliday junction branch migration protein RuvA Machinery gene
  KPA27_RS00355 (KPA27_00355) - 63554..64123 (+) 570 WP_024402110.1 DNA-3-methyladenine glycosylase I -
  KPA27_RS00360 (KPA27_00360) cinA 64160..65341 (+) 1182 WP_044681379.1 competence/damage-inducible protein A Machinery gene
  KPA27_RS00365 (KPA27_00365) recA 65393..66544 (+) 1152 WP_044679554.1 recombinase RecA Machinery gene
  KPA27_RS00370 (KPA27_00370) spx 66780..67178 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  KPA27_RS00375 (KPA27_00375) - 67278..67544 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  KPA27_RS00380 (KPA27_00380) ruvX 67544..67963 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  KPA27_RS00385 (KPA27_00385) - 67975..68295 (+) 321 WP_044679552.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21764.14 Da        Isoelectric Point: 5.7417

>NTDB_id=503117 KPA27_RS00350 WP_074391042.1 62710..63300(+) (ruvA) [Streptococcus suis strain 39565]
MYYYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVISEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=503117 KPA27_RS00350 WP_074391042.1 62710..63300(+) (ruvA) [Streptococcus suis strain 39565]
ATGTACTACTATATTAAAGGAATTTTAACGAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAACCCTTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATCTGCTTTACGGATTTGCGACTGAGAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTCGATGATAATGATGGGCTTGTTCGTGCCATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTTATCA
GCGAAGAAGCTGGTCCTGTCCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCTGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACCAATGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408