Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HBHAL_RS20045 Genome accession   NC_017668
Coordinates   4121218..4121721 (-) Length   167 a.a.
NCBI ID   WP_014645360.1    Uniprot ID   I0JTK6
Organism   Halobacillus halophilus DSM 2266     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4116218..4126721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBHAL_RS20020 (HBHAL_5138) - 4116616..4118301 (+) 1686 WP_014645355.1 peptide ABC transporter substrate-binding protein -
  HBHAL_RS20025 (HBHAL_5139) - 4118436..4119062 (+) 627 WP_014645356.1 YitT family protein -
  HBHAL_RS20030 (HBHAL_5140) hmpA 4119080..4120303 (-) 1224 WP_014645357.1 NO-inducible flavohemoprotein -
  HBHAL_RS20035 (HBHAL_5141) - 4120477..4120914 (+) 438 WP_014645358.1 Rrf2 family transcriptional regulator -
  HBHAL_RS20040 (HBHAL_5142) rpsR 4120968..4121195 (-) 228 WP_014645359.1 30S ribosomal protein S18 -
  HBHAL_RS20045 (HBHAL_5143) ssbA 4121218..4121721 (-) 504 WP_014645360.1 single-stranded DNA-binding protein Machinery gene
  HBHAL_RS20050 (HBHAL_5144) rpsF 4121734..4122027 (-) 294 WP_014645361.1 30S ribosomal protein S6 -
  HBHAL_RS20055 (HBHAL_5145) ychF 4122165..4123262 (-) 1098 WP_014645362.1 redox-regulated ATPase YchF -
  HBHAL_RS20060 (HBHAL_5146) - 4123481..4123678 (-) 198 WP_014645363.1 DUF951 domain-containing protein -
  HBHAL_RS20065 (HBHAL_5147) - 4123702..4124589 (-) 888 WP_145956149.1 mechanosensitive ion channel family protein -
  HBHAL_RS20070 (HBHAL_5148) - 4124658..4125677 (-) 1020 WP_014645365.1 membrane protein -
  HBHAL_RS20075 (HBHAL_5149) yyaC 4125767..4126393 (+) 627 WP_014645366.1 spore protease YyaC -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18188.66 Da        Isoelectric Point: 4.4561

>NTDB_id=50275 HBHAL_RS20045 WP_014645360.1 4121218..4121721(-) (ssbA) [Halobacillus halophilus DSM 2266]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNNQGGQDADFLNCVVWRRAAENLANFMNKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGSSSQGGSNRGGSGYQANQNQQPSGNNFGSNNNNNNNNQRDEDPFADNGEPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=50275 HBHAL_RS20045 WP_014645360.1 4121218..4121721(-) (ssbA) [Halobacillus halophilus DSM 2266]
ATGTTAAATCGTGTCGTATTAGTCGGCAGATTGACGAAGGATCCTGATTTACGCTATACGCCAAACGGAGTGGCCGTCGC
CAACTTCACCATTGCGGTGAACCGACCATTTTCTAATAATCAAGGTGGTCAGGACGCAGATTTTCTTAACTGCGTGGTCT
GGAGACGTGCTGCAGAAAACTTAGCCAACTTTATGAATAAAGGCAGTCTTGTAGGAGTGGATGGACGATTACAGTCCAGA
AGCTTTGATAACCAGGAAGGCAAGCGTGTATTTGTAACAGAAGTAGTTGCAGATAGCGTACAATTCTTAGAATCCAAAGG
AAGTTCTTCCCAGGGTGGAAGTAATCGTGGAGGCTCAGGATACCAGGCAAATCAGAATCAACAACCATCCGGAAATAATT
TCGGATCGAACAACAACAATAATAACAACAATCAACGAGATGAGGATCCATTCGCAGATAATGGAGAGCCCATCGATATA
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0JTK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.551
  ssb Glaesserella parasuis strain SC1401

35.955

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.473

0.383

Multiple sequence alignment