Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KMZ16_RS14265 Genome accession   NZ_CP076445
Coordinates   2729766..2730461 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2724766..2735461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS14240 (KMZ16_14110) minD 2725702..2726508 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  KMZ16_RS14245 (KMZ16_14115) minC 2726510..2727190 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  KMZ16_RS14250 (KMZ16_14120) mreD 2727243..2727761 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  KMZ16_RS14255 (KMZ16_14125) mreC 2727758..2728630 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  KMZ16_RS14260 (KMZ16_14130) mreB 2728661..2729674 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KMZ16_RS14265 (KMZ16_14135) ysxA/radC 2729766..2730461 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  KMZ16_RS14270 (KMZ16_14140) maf 2730498..2731067 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KMZ16_RS14275 (KMZ16_14145) spoIIB 2731220..2732218 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  KMZ16_RS14280 (KMZ16_14150) comC 2732345..2733097 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  KMZ16_RS14285 (KMZ16_14155) folC 2733237..2734529 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=502536 KMZ16_RS14265 WP_015251546.1 2729766..2730461(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain ps4100]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=502536 KMZ16_RS14265 WP_015251546.1 2729766..2730461(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain ps4100]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424