Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7A10_RS22870 Genome accession   NZ_CP076274
Coordinates   4658160..4658696 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain P393-F10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4653160..4663696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A10_RS22850 (A7A10_22755) aphA 4653449..4654162 (+) 714 WP_001315956.1 acid phosphatase AphA -
  A7A10_RS22855 (A7A10_22760) yjbQ 4654273..4654689 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7A10_RS22860 (A7A10_22765) yjbR 4654693..4655049 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A7A10_RS22865 (A7A10_22770) uvrA 4655084..4657906 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  A7A10_RS22870 (A7A10_22775) ssb 4658160..4658696 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A7A10_RS22875 (A7A10_22780) yjcB 4658795..4659076 (-) 282 WP_001295689.1 YjcB family protein -
  A7A10_RS22880 (A7A10_22785) pdeC 4659506..4661092 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  A7A10_RS22885 (A7A10_22790) soxS 4661095..4661418 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A7A10_RS22890 (A7A10_22795) soxR 4661504..4661968 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=501627 A7A10_RS22870 WP_000168305.1 4658160..4658696(+) (ssb) [Escherichia coli strain P393-F10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=501627 A7A10_RS22870 WP_000168305.1 4658160..4658696(+) (ssb) [Escherichia coli strain P393-F10]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489