Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IUJ40_RS12740 | Genome accession | NZ_CP064389 |
| Coordinates | 2497606..2498109 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain PartE-Saureus-RM8376 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2477252..2498861 | 2497606..2498109 | within | 0 |
Gene organization within MGE regions
Location: 2477252..2498861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ40_RS12585 (IUJ40_12565) | - | 2477252..2477503 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| IUJ40_RS12590 (IUJ40_12570) | - | 2477803..2478066 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| IUJ40_RS12595 (IUJ40_12575) | - | 2478204..2478776 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| IUJ40_RS12600 (IUJ40_12580) | - | 2478957..2479325 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| IUJ40_RS12605 (IUJ40_12585) | selX | 2479694..2480305 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| IUJ40_RS12610 (IUJ40_12590) | - | 2480511..2481212 (+) | 702 | Protein_2448 | tyrosine-type recombinase/integrase | - |
| IUJ40_RS12615 (IUJ40_12595) | - | 2481251..2482189 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| IUJ40_RS12620 | - | 2482981..2483160 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| IUJ40_RS12625 (IUJ40_12600) | - | 2483176..2483688 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| IUJ40_RS12630 (IUJ40_12605) | - | 2483806..2484207 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| IUJ40_RS12635 (IUJ40_12610) | - | 2484385..2485353 (-) | 969 | WP_000801977.1 | Abi family protein | - |
| IUJ40_RS12645 (IUJ40_12615) | - | 2485630..2486199 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| IUJ40_RS12650 (IUJ40_12620) | - | 2486196..2486538 (-) | 343 | Protein_2455 | pathogenicity island protein | - |
| IUJ40_RS12655 (IUJ40_12625) | - | 2486541..2487067 (-) | 527 | Protein_2456 | spore coat protein | - |
| IUJ40_RS12660 (IUJ40_12630) | - | 2487120..2487773 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| IUJ40_RS12665 (IUJ40_12635) | - | 2487804..2488145 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| IUJ40_RS12670 (IUJ40_12640) | - | 2488707..2489348 (-) | 642 | WP_140045510.1 | pathogenicity island protein | - |
| IUJ40_RS12675 (IUJ40_12645) | - | 2489345..2489629 (-) | 285 | WP_000998179.1 | hypothetical protein | - |
| IUJ40_RS12680 (IUJ40_12650) | - | 2489631..2489993 (-) | 363 | WP_031765322.1 | hypothetical protein | - |
| IUJ40_RS12685 (IUJ40_12655) | - | 2490294..2491751 (-) | 1458 | WP_031765320.1 | virulence-associated E family protein | - |
| IUJ40_RS12690 (IUJ40_12660) | - | 2491768..2492637 (-) | 870 | WP_031765319.1 | primase alpha helix C-terminal domain-containing protein | - |
| IUJ40_RS12695 (IUJ40_12665) | tscT | 2492702..2493025 (-) | 324 | WP_001103945.1 | type II toxin-antitoxin system toxin TscT | - |
| IUJ40_RS12700 (IUJ40_12670) | tscA | 2493028..2493237 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| IUJ40_RS12705 (IUJ40_12675) | - | 2493230..2493376 (-) | 147 | WP_000784875.1 | hypothetical protein | - |
| IUJ40_RS12710 (IUJ40_12680) | - | 2493388..2493660 (-) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| IUJ40_RS12715 (IUJ40_12685) | - | 2493661..2493873 (-) | 213 | WP_001245562.1 | helix-turn-helix transcriptional regulator | - |
| IUJ40_RS12720 (IUJ40_12690) | - | 2494045..2494770 (+) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| IUJ40_RS12725 (IUJ40_12695) | - | 2495034..2496248 (+) | 1215 | WP_140045509.1 | site-specific integrase | - |
| IUJ40_RS12730 (IUJ40_12700) | - | 2496361..2497080 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IUJ40_RS12735 (IUJ40_12705) | rpsR | 2497312..2497554 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| IUJ40_RS12740 (IUJ40_12710) | ssbA | 2497606..2498109 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| IUJ40_RS12745 (IUJ40_12715) | rpsF | 2498130..2498426 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| IUJ40_RS12750 (IUJ40_12720) | - | 2498670..2498861 (+) | 192 | WP_023487103.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=501600 IUJ40_RS12740 WP_000934799.1 2497606..2498109(-) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=501600 IUJ40_RS12740 WP_000934799.1 2497606..2498109(-) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |