Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAAG_RS08125 Genome accession   NC_022113
Coordinates   1663676..1664362 (-) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 55/2053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658676..1669362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAAG_RS08085 (SAAG_01558) rpmA 1659389..1659673 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAAG_RS08090 (SAAG_01559) - 1659685..1660005 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAAG_RS08095 (SAAG_01560) rplU 1660011..1660320 (-) 310 Protein_1577 50S ribosomal protein L21 -
  SAAG_RS08100 (SAAG_01561) mreD 1660613..1661143 (-) 531 WP_001259929.1 rod shape-determining protein MreD -
  SAAG_RS08105 (SAAG_01562) mreC 1661143..1661985 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SAAG_RS08110 - 1662185..1662304 (-) 120 WP_000840603.1 hypothetical protein -
  SAAG_RS08115 (SAAG_01563) - 1662378..1662851 (-) 474 WP_001236733.1 DUF4930 family protein -
  SAAG_RS14460 - 1663011..1663208 (+) 198 WP_000025835.1 hypothetical protein -
  SAAG_RS08120 (SAAG_01565) - 1663324..1663608 (-) 285 WP_000171861.1 hypothetical protein -
  SAAG_RS08125 (SAAG_01566) ysxA/radC 1663676..1664362 (-) 687 WP_000692886.1 RadC family protein Machinery gene
  SAAG_RS08130 (SAAG_01567) - 1664359..1665066 (-) 708 WP_000261106.1 prepilin peptidase -
  SAAG_RS08140 (SAAG_01568) - 1665327..1666598 (-) 1272 WP_001108339.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SAAG_RS08145 (SAAG_01569) - 1666611..1669241 (-) 2631 WP_000425358.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=50156 SAAG_RS08125 WP_000692886.1 1663676..1664362(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus 55/2053]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=50156 SAAG_RS08125 WP_000692886.1 1663676..1664362(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus 55/2053]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment