Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7A11_RS22550 Genome accession   NZ_CP076272
Coordinates   4606986..4607522 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain E21845/O/A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4601986..4612522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A11_RS22530 aphA 4602275..4602988 (+) 714 WP_012139735.1 acid phosphatase AphA -
  A7A11_RS22535 yjbQ 4603099..4603515 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7A11_RS22540 yjbR 4603519..4603875 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A7A11_RS22545 uvrA 4603910..4606732 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  A7A11_RS22550 ssb 4606986..4607522 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A7A11_RS22555 yjcB 4607621..4607902 (-) 282 WP_001295689.1 YjcB family protein -
  A7A11_RS22560 pdeC 4608332..4609918 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  A7A11_RS22565 soxS 4609921..4610244 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A7A11_RS22570 soxR 4610330..4610794 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=501549 A7A11_RS22550 WP_000168305.1 4606986..4607522(+) (ssb) [Escherichia coli strain E21845/O/A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=501549 A7A11_RS22550 WP_000168305.1 4606986..4607522(+) (ssb) [Escherichia coli strain E21845/O/A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489