Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ44_RS04225 Genome accession   NZ_CP064375
Coordinates   917420..918001 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 912420..923001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS04215 (IUJ44_04210) - 914489..916045 (-) 1557 WP_000163911.1 site-specific integrase -
  IUJ44_RS04220 (IUJ44_04215) - 916038..917264 (-) 1227 WP_002147669.1 site-specific integrase -
  IUJ44_RS04225 (IUJ44_04220) ssb 917420..918001 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  IUJ44_RS04230 (IUJ44_04225) - 918053..919417 (-) 1365 WP_001985116.1 MFS transporter -
  IUJ44_RS04235 (IUJ44_04230) - 919564..920646 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  IUJ44_RS04240 (IUJ44_04235) tenA 920909..921583 (+) 675 WP_000899418.1 thiaminase II -
  IUJ44_RS04245 (IUJ44_04240) - 921634..921975 (-) 342 WP_000263327.1 GlpM family protein -
  IUJ44_RS04250 (IUJ44_04245) - 922028..922381 (-) 354 WP_000580166.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=501315 IUJ44_RS04225 WP_001215080.1 917420..918001(-) (ssb) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=501315 IUJ44_RS04225 WP_001215080.1 917420..918001(-) (ssb) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGGGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGCGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394