Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   IUJ45_RS05510 Genome accession   NZ_CP064367
Coordinates   1085239..1085688 (-) Length   149 a.a.
NCBI ID   WP_002237378.1    Uniprot ID   A0A0U1RHA9
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080239..1090688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS05485 (IUJ45_05585) - 1081041..1081463 (-) 423 WP_002246501.1 very short patch repair endonuclease -
  IUJ45_RS05490 (IUJ45_05590) - 1081467..1083113 (-) 1647 WP_002237377.1 TIGR02391 family protein -
  IUJ45_RS05495 (IUJ45_05595) - 1083127..1084182 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  IUJ45_RS05500 (IUJ45_05600) - 1084472..1084684 (+) 213 WP_002234366.1 SWIM zinc finger domain-containing protein -
  IUJ45_RS05505 (IUJ45_05605) - 1084755..1085078 (+) 324 WP_226893047.1 5'-nucleotidase -
  IUJ45_RS05510 (IUJ45_05610) comP 1085239..1085688 (-) 450 WP_002237378.1 type IV pilin protein Machinery gene
  IUJ45_RS05515 (IUJ45_05615) comE 1085776..1086240 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16864.83 Da        Isoelectric Point: 9.7951

>NTDB_id=501172 IUJ45_RS05510 WP_002237378.1 1085239..1085688(-) (comP) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINTVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=501172 IUJ45_RS05510 WP_002237378.1 1085239..1085688(-) (comP) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATACAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1RHA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483