Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IUJ45_RS05515 Genome accession   NZ_CP064367
Coordinates   1085776..1086240 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080776..1091240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS05485 (IUJ45_05585) - 1081041..1081463 (-) 423 WP_002246501.1 very short patch repair endonuclease -
  IUJ45_RS05490 (IUJ45_05590) - 1081467..1083113 (-) 1647 WP_002237377.1 TIGR02391 family protein -
  IUJ45_RS05495 (IUJ45_05595) - 1083127..1084182 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  IUJ45_RS05500 (IUJ45_05600) - 1084472..1084684 (+) 213 WP_002234366.1 SWIM zinc finger domain-containing protein -
  IUJ45_RS05505 (IUJ45_05605) - 1084755..1085078 (+) 324 WP_226893047.1 5'-nucleotidase -
  IUJ45_RS05510 (IUJ45_05610) comP 1085239..1085688 (-) 450 WP_002237378.1 type IV pilin protein Machinery gene
  IUJ45_RS05515 (IUJ45_05615) comE 1085776..1086240 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=501173 IUJ45_RS05515 WP_010981060.1 1085776..1086240(-) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=501173 IUJ45_RS05515 WP_010981060.1 1085776..1086240(-) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747